Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008270.1 Kokia drynarioides strain JFW-HI SEQ_122935, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9850
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.34


Found at i:7576 original size:47 final size:47

Alignment explanation


    Indices: 7504--7611  Score: 135
    Period size: 47  Copynumber: 2.3  Consensus size: 47

       7494 AAGGTGGAAG

                   *       *    *     **                   
       7504 TTATTGGGAGTTTATTTGCGGTTTTGTTGGCTTGCCCACAATATTGA
          1 TTATTGGTAGTTTATATGCGATTTTGGCGGCTTGCCCACAATATTGA

                                              *   **  *    
       7551 TTATTGGTAGTTTATATGCGATTTTGGCGGCTTGTCCATGATTTTGA
          1 TTATTGGTAGTTTATATGCGATTTTGGCGGCTTGCCCACAATATTGA

                          
       7598 TTATTGGTAGTTTA
          1 TTATTGGTAGTTTA

       7612 CCTGTGATTT


Statistics
Matches: 52,  Mismatches: 9, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  47   52  1.00

ACGTcount: A:0.18, C:0.10, G:0.25, T:0.47


Consensus pattern (47 bp):   
TTATTGGTAGTTTATATGCGATTTTGGCGGCTTGCCCACAATATTGA
Done.