Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008271.1 Kokia drynarioides strain JFW-HI SEQ_122936, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2601
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35


Found at i:1654 original size:12 final size:12

Alignment explanation


    Indices: 1637--1664  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

       1627 TCATATTTTG

                        
       1637 AATATCAAAATA
          1 AATATCAAAATA

                        
       1649 AATATCAAAATA
          1 AATATCAAAATA

                
       1661 AATA
          1 AATA

       1665 CCAGTTGTAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25


Consensus pattern (12 bp):   
AATATCAAAATA
Done.