Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008279.1 Kokia drynarioides strain JFW-HI SEQ_122944, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1678
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34


Found at i:147 original size:52 final size:52

Alignment explanation


    Indices: 1--326  Score: 429
    Period size: 52  Copynumber: 6.3  Consensus size: 52

                                   *                        *   
          1 ATGACACATAGTCATCGGACCTCTTAATCCGTAAAGGATTCATATACTTACG
          1 ATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACG

                *            *     *     *                    * 
         53 ATGATACATAGTCATC-AACCTCTTAATCTGTAAAGGATTCATATACTCAAG
          1 ATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACG

             *  *           **          *      **       *       
        104 ACGATACATAGTCATCAAACCTCATAATTCGTAAAAAATTCATACACTCACG
          1 ATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACG

                                               **               
        156 ATGACACATAGTCATCGGACCTCATAATCCGTAAAACATTCATATACTCACG
          1 ATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACG

                            *           * *                     
        208 ATGACACATAGTCATCAGACCTCATAATTCATAAAGGATTCATATACTCACG
          1 ATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACG

               *               *          *                     
        260 ATGGCACATAGTCATCGGATCTCATAATCCATAAAGGATTCATATACTCACG
          1 ATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACG

                  *        
        312 ATGACAAATAGTCAT
          1 ATGACACATAGTCAT

        327 TAGACTTTTT


Statistics
Matches: 242,  Mismatches: 31, Indels: 2
        0.88            0.11        0.01

Matches are distributed among these distances:
  51   46  0.19
  52  196  0.81

ACGTcount: A:0.37, C:0.23, G:0.12, T:0.27


Consensus pattern (52 bp):   
ATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACG

Done.