Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000828.1 Kokia drynarioides strain JFW-HI SEQ_111922, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10734
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33


Found at i:1567 original size:31 final size:31

Alignment explanation


    Indices: 1529--1593  Score: 130
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       1519 GACATGTTCA

                                           
       1529 TTCCTATTATCACACCACTTTGTCTTTTTCT
          1 TTCCTATTATCACACCACTTTGTCTTTTTCT

                                           
       1560 TTCCTATTATCACACCACTTTGTCTTTTTCT
          1 TTCCTATTATCACACCACTTTGTCTTTTTCT

               
       1591 TTC
          1 TTC

       1594 TAAAGAGGTG


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   34  1.00

ACGTcount: A:0.15, C:0.29, G:0.03, T:0.52


Consensus pattern (31 bp):   
TTCCTATTATCACACCACTTTGTCTTTTTCT

Done.