Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008280.1 Kokia drynarioides strain JFW-HI SEQ_122945, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2683
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34


Found at i:914 original size:52 final size:50

Alignment explanation


    Indices: 777--928  Score: 137
    Period size: 52  Copynumber: 2.9  Consensus size: 50

        767 GAAATATATA

                *         *       *                              
        777 TAAACAAATTATTTTTATTTATGTAAAACATATCAGATCTAAACAAAATCAAT
          1 TAAATAAA-TATTTATATTTATATAAAAC--ATCAGATCTAAACAAAATCAAT

                                      *          *              * 
        830 TAAATAAATATTTAT-TTTAAATATATAACATCAGATTTAAAC-AAATCACTTT
          1 TAAATAAATATTTATATTT--ATATAAAACATCAGATCTAAACAAAATCA--AT

                                 *               *   *     
        882 TAAATAAATATTTATATTTATTTAAAAGCATCAGATCCAAAAAAAAT
          1 TAAATAAATATTTATATTTATATAAAA-CATCAGATCTAAACAAAAT

        929 ATTAAAATAA


Statistics
Matches: 81,  Mismatches: 11, Indels: 14
        0.76            0.10        0.13

Matches are distributed among these distances:
  50    6  0.07
  51   21  0.26
  52   33  0.41
  53   21  0.26

ACGTcount: A:0.50, C:0.10, G:0.03, T:0.37


Consensus pattern (50 bp):   
TAAATAAATATTTATATTTATATAAAACATCAGATCTAAACAAAATCAAT
Done.