Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008283.1 Kokia drynarioides strain JFW-HI SEQ_122948, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 911

Length: 1519
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32


Found at i:1254 original size:79 final size:79

Alignment explanation


    Indices: 1123--1279  Score: 242
    Period size: 79  Copynumber: 2.0  Consensus size: 79

       1113 ATACAAACAC

                   *                *   **                          **       
       1123 TAATTTCTTTTTAACTCTTGTAGGGAAGTTAATGAGTCGTGTCTCTTCATTAGGATTTGATGTAG
          1 TAATTTCATTTTAACTCTTGTAGGAAAGCCAATGAGTCGTGTCTCTTCATTAGGATCCGATGTAG

            *             
       1188 TTAAAAAGGCATGG
         66 CTAAAAAGGCATGG

                                                                             
       1202 TAATTTCATTTTAACTCTTGTAGGAAAGCCAATGAGTCGTGTCTCTTCATTAGGATCCGATGTAG
          1 TAATTTCATTTTAACTCTTGTAGGAAAGCCAATGAGTCGTGTCTCTTCATTAGGATCCGATGTAG

              *          
       1267 CTGAAAAGGCATG
         66 CTAAAAAGGCATG

       1280 ATATTTCTCC


Statistics
Matches: 70,  Mismatches: 8, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  79   70  1.00

ACGTcount: A:0.27, C:0.13, G:0.22, T:0.37


Consensus pattern (79 bp):   
TAATTTCATTTTAACTCTTGTAGGAAAGCCAATGAGTCGTGTCTCTTCATTAGGATCCGATGTAG
CTAAAAAGGCATGG
Done.