Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008289.1 Kokia drynarioides strain JFW-HI SEQ_122954, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5301
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:2686 original size:14 final size:15

Alignment explanation


    Indices: 2667--2703  Score: 60
    Period size: 14  Copynumber: 2.6  Consensus size: 15

       2657 TATTAGTTTT

                           
       2667 TTCATTTTTC-AAAA
          1 TTCATTTTTCGAAAA

                           
       2681 TTCATTTTTCGAAAA
          1 TTCATTTTTCGAAAA

                     
       2696 TT-ATTTTT
          1 TTCATTTTT

       2704 AATTAAACAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  14   16  0.73
  15    6  0.27

ACGTcount: A:0.30, C:0.11, G:0.03, T:0.57


Consensus pattern (15 bp):   
TTCATTTTTCGAAAA

Done.