Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000829.1 Kokia drynarioides strain JFW-HI SEQ_111924, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2130
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Found at i:1907 original size:16 final size:16

Alignment explanation


    Indices: 1868--1913  Score: 60
    Period size: 16  Copynumber: 2.9  Consensus size: 16

       1858 TTTATGCTTA

                  *         
       1868 TTTCATCTTTATTTAT
          1 TTTCATGTTTATTTAT

                            
       1884 TTTCATGTTTATTTAT
          1 TTTCATGTTTATTTAT

                            
       1900 ATTT-ATGTTT-TTTA
          1 -TTTCATGTTTATTTA

       1914 CACATTTCCC


Statistics
Matches: 28,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  15    4  0.14
  16   21  0.75
  17    3  0.11

ACGTcount: A:0.20, C:0.07, G:0.04, T:0.70


Consensus pattern (16 bp):   
TTTCATGTTTATTTAT
Done.