Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008290.1 Kokia drynarioides strain JFW-HI SEQ_122955, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12210
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1406 original size:17 final size:17

Alignment explanation


    Indices: 1375--1408  Score: 52
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1365 TTGAATTTCA

                             
       1375 ATTCATAAATTTGTAAT
          1 ATTCATAAATTTGTAAT

                              
       1392 ATTCA-AAATTGTGTAAT
          1 ATTCATAAATT-TGTAAT

       1409 TGATAAAAAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    5  0.31
  17   11  0.69

ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44


Consensus pattern (17 bp):   
ATTCATAAATTTGTAAT
Done.