Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01008307.1 Kokia drynarioides strain JFW-HI SEQ_122972, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118049

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2873--2942
34
2.1
34
100
0
140
32
25
8
32
1.86
18499--18544
24
1.9
24
86
0
65
54
0
0
45
0.99
18498--18551
24
2.2
24
80
0
63
57
1
0
40
1.09
46043--46080
15
2.4
16
82
8
51
42
2
5
50
1.39
48363--48477
4
28.5
4
72
11
74
66
6
3
23
1.29
48365--48411
12
3.9
12
94
0
85
65
0
8
25
1.20
48366--48423
24
2.4
24
88
5
82
67
3
6
22
1.30
48417--48478
25
2.5
24
86
5
79
67
8
0
24
1.17
55337--55876
40
12.8
43
73
13
199
25
16
25
32
1.96
55338--55551
78
2.6
79
83
7
250
25
17
24
31
1.97
55542--55851
78
3.7
81
80
12
283
24
16
25
33
1.96
58736--58770
18
1.9
18
94
0
61
2
25
0
71
1.00
58737--58776
18
2.2
18
86
0
53
2
27
2
67
1.16
67485--67659
44
4.0
44
84
0
242
23
20
21
35
1.96
68770--68830
6
11.0
6
73
15
51
0
18
1
80
0.80
68773--68826
16
3.3
16
80
12
65
0
18
1
79
0.82
73636--73679
18
2.4
18
88
0
70
47
6
13
31
1.69
74350--74556
30
7.0
31
81
10
204
38
5
20
35
1.75
77680--77769
46
1.9
47
86
2
128
23
24
20
32
1.98
79802--79830
2
15.0
2
92
7
51
48
0
0
51
1.00
88727--88770
8
5.4
8
81
13
54
59
0
0
40
0.98
88727--88770
17
2.6
17
82
13
56
59
0
0
40
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97158--97586
215
2.0
215
92
0
707
29
17
19
34
1.94
102085--102122
12
3.1
13
81
14
53
60
5
34
0
1.19
102479--102528
23
2.2
23
96
3
93
14
4
18
64
1.44
105557--105639
26
3.2
26
92
0
139
36
24
16
22
1.95
106196--106227
16
2.0
16
93
0
55
43
21
12
21
1.86
106961--107189
40
5.8
40
83
0
280
24
30
20
23
1.99
115084--115135
20
2.6
19
84
6
68
71
1
0
26
0.97
115083--115166
29
2.8
30
78
10
84
66
2
1
29
1.11
115123--115262
19
7.3
19
68
20
69
60
2
4
32
1.31
115123--115205
39
2.1
40
82
6
98
62
3
4
28
1.32
115259--115331
10
7.4
9
73
13
56
53
2
2
41
1.29
115237--115331
20
4.8
19
81
12
102
53
2
3
41
1.28
115322--115391
20
3.5
20
76
3
70
58
1
11
28
1.41
115629--115762
10
13.3
10
69
16
62
38
3
1
56
1.26
115618--115664
20
2.3
20
100
0
94
44
4
0
51
1.21
115618--115735
20
5.8
20
78
5
85
35
4
1
58
1.28
115618--115738
40
3.0
39
78
6
116
37
4
1
57
1.28
115649--115720
30
2.4
30
78
17
78
34
0
2
62
1.10
115690--115841
20
7.8
19
70
15
82
37
6
0
55
1.26
116869--118047
162
7.4
161
81
8
1320
45
10
11
32
1.74
116869--118049
316
3.7
318
83
5
1363
45
10
11
32
1.75
116869--118047
478
2.5
478
88
1
1659
45
10
11
32
1.74

Tables:   1

The End!