Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008309.1 Kokia drynarioides strain JFW-HI SEQ_122974, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9774
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35

Warning! 21 characters in sequence are not A, C, G, or T


Found at i:2823 original size:31 final size:31

Alignment explanation


    Indices: 2762--2823  Score: 79
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       2752 TTCGATTTTA

                           *   * *         
       2762 ATTTGGATTCTGATTTTTATTTTTTAGGATT
          1 ATTTGGATTCTGATTGTTACTGTTTAGGATT

                     *               *     
       2793 ATTTGGATTTTGATTGTTACTGTTTGGGATT
          1 ATTTGGATTCTGATTGTTACTGTTTAGGATT

       2824 TAAGGTTATT


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  31   26  1.00

ACGTcount: A:0.18, C:0.03, G:0.21, T:0.58


Consensus pattern (31 bp):   
ATTTGGATTCTGATTGTTACTGTTTAGGATT
Done.