Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01008310.1 Kokia drynarioides strain JFW-HI SEQ_122975, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 149866
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:3202 original size:27 final size:26
Alignment explanation
Indices: 3157--3210 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
3147 TGGAATGCAA
3157 TTCTTTAAAAAAAATAAAAAATTAAG
1 TTCTTTAAAAAAAATAAAAAATTAAG
3183 TTCTTTAAAAAAAATAAAAAATTAAG
1 TTCTTTAAAAAAAATAAAAAATTAAG
3209 TT
1 TT
3211 TGAATAAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (26 bp):
TTCTTTAAAAAAAATAAAAAATTAAG
Found at i:5741 original size:62 final size:62
Alignment explanation
Indices: 5642--5765 Score: 212
Period size: 62 Copynumber: 2.0 Consensus size: 62
5632 ATGTTGTGAC
* *
5642 ATAGTGATCAACTTCATACTTATTTGTCTTCTGAAGGTTTCCTGTACACTCACAAAGTTCGT
1 ATAGTGATCAACTTCATACTTATTTGTCTTCTAAAGGTTTCCTGCACACTCACAAAGTTCGT
* *
5704 ATAGTGATCAAGTTCATACTTATTTGTCTTCTAAAGGTTTCTTGCACACTCACAAAGTTCGT
1 ATAGTGATCAACTTCATACTTATTTGTCTTCTAAAGGTTTCCTGCACACTCACAAAGTTCGT
5766 TAGCTAACCC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (62 bp):
ATAGTGATCAACTTCATACTTATTTGTCTTCTAAAGGTTTCCTGCACACTCACAAAGTTCGT
Found at i:9794 original size:35 final size:35
Alignment explanation
Indices: 9755--9826 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
9745 TATAATCATA
9755 TTTGAGTTTAATTTTGTGACTACCATCACAATGCT
1 TTTGAGTTTAATTTTGTGACTACCATCACAATGCT
9790 TTTGAGTTTAATTTTGTGACTACCATCACAATGCT
1 TTTGAGTTTAATTTTGTGACTACCATCACAATGCT
9825 TT
1 TT
9827 ATCATGATTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.44
Consensus pattern (35 bp):
TTTGAGTTTAATTTTGTGACTACCATCACAATGCT
Found at i:17772 original size:6 final size:6
Alignment explanation
Indices: 17761--17810 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
17751 ACCTAAAAAG
* *
17761 AAGAAA AAGAAA AAG-AA AAGATA AAGAAA AA-AAGA AAAAAA AAGAAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAA-A AAGAAA AAGAAA
17808 AAG
1 AAG
17811 GAGAGGTCGA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
5 7 0.18
6 29 0.76
7 2 0.05
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (6 bp):
AAGAAA
Found at i:17781 original size:11 final size:10
Alignment explanation
Indices: 17755--17809 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
17745 GATTTCACCT
*
17755 AAAAAGAAGAA
1 AAAAAAAAG-A
17766 AAAGAAAAAGA
1 AAA-AAAAAGA
*
17777 AAAGATAAAG-
1 AAA-AAAAAGA
17787 -AAAAAAAGA
1 AAAAAAAAGA
17796 AAAAAAAAGA
1 AAAAAAAAGA
17806 AAAA
1 AAAA
17810 GGAGAGGTCG
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
8 5 0.13
9 2 0.05
10 13 0.34
11 13 0.34
12 5 0.13
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.02
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:17804 original size:18 final size:19
Alignment explanation
Indices: 17761--17809 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
17751 ACCTAAAAAG
17761 AAGAAAAAG--AAAAAGAA
1 AAGAAAAAGAAAAAAAGAA
*
17778 AAGATAAAGAAAAAAAGAA
1 AAGAAAAAGAAAAAAAGAA
17797 AA-AAAAAGAAAAA
1 AAGAAAAAGAAAAA
17810 GGAGAGGTCG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 8 0.29
18 10 0.36
19 10 0.36
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (19 bp):
AAGAAAAAGAAAAAAAGAA
Found at i:20191 original size:21 final size:21
Alignment explanation
Indices: 20165--20216 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
20155 TGAGACAATA
20165 CTACCGATACAAGT-ATGACTT
1 CTACCGATACAAGTCATG-CTT
* *
20186 CTACCGAAACATGTCATGCTT
1 CTACCGATACAAGTCATGCTT
*
20207 TTACCGATAC
1 CTACCGATAC
20217 TAAAAACTCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (21 bp):
CTACCGATACAAGTCATGCTT
Found at i:30065 original size:14 final size:15
Alignment explanation
Indices: 30046--30078 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
30036 ACGCATTTCT
30046 TTATTT-ACTTTCAG
1 TTATTTCACTTTCAG
*
30060 TTATTTCACTTTTAG
1 TTATTTCACTTTCAG
30075 TTAT
1 TTAT
30079 GTTGTTTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.21, C:0.12, G:0.06, T:0.61
Consensus pattern (15 bp):
TTATTTCACTTTCAG
Found at i:32366 original size:17 final size:18
Alignment explanation
Indices: 32346--32385 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
32336 TAAGTTTTAA
32346 TGCATTTT-TATTATCAC
1 TGCATTTTATATTATCAC
* *
32363 TGCATTTTATTTTGTCAC
1 TGCATTTTATATTATCAC
32381 TGCAT
1 TGCAT
32386 GATTTTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.53
Consensus pattern (18 bp):
TGCATTTTATATTATCAC
Found at i:34044 original size:45 final size:45
Alignment explanation
Indices: 33989--34079 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
33979 GTTGATATTA
33989 AATGAATACGAGAGTATCTTTTAATATTATATCATTTTGATTCTT
1 AATGAATACGAGAGTATCTTTTAATATTATATCATTTTGATTCTT
34034 AATGAATACGAGAGTATCTTTTAATATTATATCATTTTGATTCTT
1 AATGAATACGAGAGTATCTTTTAATATTATATCATTTTGATTCTT
34079 A
1 A
34080 CTTTGCATTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (45 bp):
AATGAATACGAGAGTATCTTTTAATATTATATCATTTTGATTCTT
Found at i:47558 original size:3 final size:3
Alignment explanation
Indices: 47550--47606 Score: 57
Period size: 3 Copynumber: 19.0 Consensus size: 3
47540 GTATTGAATT
*
47550 AGA AGA AGA AGAA AGA A-A AGA AGA AGA AAA AGA AG- AGA AGGA AGA
1 AGA AGA AGA AG-A AGA AGA AGA AGA AGA AGA AGA AGA AGA A-GA AGA
47595 A-A ATGA AGA AGA
1 AGA A-GA AGA AGA
47607 CATTGCCCTG
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
2 6 0.13
3 32 0.70
4 8 0.17
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:47576 original size:21 final size:23
Alignment explanation
Indices: 47550--47606 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 23
47540 GTATTGAATT
47550 AGAAGAAGAAGAA-AGAA-AAGA
1 AGAAGAAGAAGAAGAGAAGAAGA
*
47571 AGAAGAAAAAGAAGAGAAGGAAGA
1 AGAAGAAGAAGAAGAGAA-GAAGA
47595 A-AATGAAGAAGA
1 AGAA-GAAGAAGA
47607 CATTGCCCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
21 12 0.40
22 4 0.13
23 2 0.07
24 12 0.40
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (23 bp):
AGAAGAAGAAGAAGAGAAGAAGA
Found at i:47596 original size:18 final size:17
Alignment explanation
Indices: 47550--47603 Score: 72
Period size: 18 Copynumber: 3.1 Consensus size: 17
47540 GTATTGAATT
*
47550 AGAAGAAGAAGAAAGAAA
1 AGAAGAAGAA-AAAGAAG
47568 AGAAGAAGAAAAAGAAG
1 AGAAGAAGAAAAAGAAG
*
47585 AGAAGGAAGAAAATGAAG
1 AGAA-GAAGAAAAAGAAG
47603 A
1 A
47604 AGACATTGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.30
18 23 0.70
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.02
Consensus pattern (17 bp):
AGAAGAAGAAAAAGAAG
Found at i:49191 original size:25 final size:25
Alignment explanation
Indices: 49152--49217 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
49142 TCAGAAAGCA
* *
49152 TTCAGAGTTGTGGCCATAAGTTTGG
1 TTCAGATTTGCGGCCATAAGTTTGG
* *
49177 TTCATATTTGCGGCCATATGTTTGG
1 TTCAGATTTGCGGCCATAAGTTTGG
49202 TTCAGATTTGCGGCCA
1 TTCAGATTTGCGGCCA
49218 AATATGTCAC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.18, C:0.17, G:0.27, T:0.38
Consensus pattern (25 bp):
TTCAGATTTGCGGCCATAAGTTTGG
Found at i:59489 original size:18 final size:19
Alignment explanation
Indices: 59456--59492 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
59446 ACAAAAATTA
*
59456 CAAAATAATTTTTAAAAAT
1 CAAAATAATTTATAAAAAT
59475 CAAAAT-ATTTATAAAAAT
1 CAAAATAATTTATAAAAAT
59493 TTCAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.35
Consensus pattern (19 bp):
CAAAATAATTTATAAAAAT
Found at i:59545 original size:39 final size:38
Alignment explanation
Indices: 59469--59569 Score: 93
Period size: 38 Copynumber: 2.6 Consensus size: 38
59459 AATAATTTTT
** *
59469 AAAAA-TCAAAATATTTATAAAAATTTCAAAATTTATATTTA
1 AAAAATTC-AAATATTT-TAAAAATTT-AAAA-AGATATATA
59510 AAAAA-T-AAATATTTTAAAAATTCTAAAAAGATATATA
1 AAAAATTCAAATATTTTAAAAATT-TAAAAAGATATATA
59547 AAAAATTCAAA-ATTTTCAAAAAT
1 AAAAATTCAAATATTTT-AAAAAT
59570 AATAATTCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
37 11 0.21
38 18 0.34
39 18 0.34
41 6 0.11
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.35
Consensus pattern (38 bp):
AAAAATTCAAATATTTTAAAAATTTAAAAAGATATATA
Found at i:59551 original size:38 final size:39
Alignment explanation
Indices: 59469--59569 Score: 100
Period size: 39 Copynumber: 2.6 Consensus size: 39
59459 AATAATTTTT
* ** *
59469 AAAAATCAAAATATTTATAAAAATTTCAAAATTTATATTTA
1 AAAAATC-AAATATTT-TAAAAATTTAAAAAGATATATTAA
59510 AAAAAT-AAATATTTTAAAAATTCTAAAAAGATATA-TAA
1 AAAAATCAAATATTTTAAAAATT-TAAAAAGATATATTAA
*
59548 AAAATTCAAA-ATTTTCAAAAAT
1 AAAAATCAAATATTTT-AAAAAT
59570 AATAATTCTA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
38 20 0.38
39 26 0.50
41 6 0.12
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.35
Consensus pattern (39 bp):
AAAAATCAAATATTTTAAAAATTTAAAAAGATATATTAA
Found at i:59860 original size:22 final size:22
Alignment explanation
Indices: 59835--59877 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
59825 GCTTCCTATT
59835 TTGCTACAATTTCATTATTATG
1 TTGCTACAATTTCATTATTATG
* * *
59857 TTGCTACTATTTTATTGTTAT
1 TTGCTACAATTTCATTATTAT
59878 TGTTTGGATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.09, T:0.56
Consensus pattern (22 bp):
TTGCTACAATTTCATTATTATG
Found at i:59968 original size:30 final size:30
Alignment explanation
Indices: 59907--59971 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
59897 AATTATTTTA
* **
59907 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTACTATTTTAGAAACAT
*
59937 TTGTTAATTTTGTTACTATTTTATAAACAT
1 TTGTTAATTTTGTTACTATTTTAGAAACAT
59967 TTGTT
1 TTGTT
59972 TGTTAAGTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.05, G:0.12, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTACTATTTTAGAAACAT
Found at i:60728 original size:19 final size:20
Alignment explanation
Indices: 60699--60752 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
60689 TCTATAATTG
* **
60699 AGTTTCATTGATTTAGTCTC
1 AGTTTCTTTGATTTAACCTC
60719 A-TTTCTTTGATTTAACCTC
1 AGTTTCTTTGATTTAACCTC
60738 AGTTGTCTTTGATTT
1 AGTT-TCTTTGATTT
60753 TTGAGATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 16 0.55
20 3 0.10
21 10 0.34
ACGTcount: A:0.19, C:0.15, G:0.13, T:0.54
Consensus pattern (20 bp):
AGTTTCTTTGATTTAACCTC
Found at i:63093 original size:17 final size:16
Alignment explanation
Indices: 63071--63116 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
63061 CAATGATGCT
63071 AAAAATAATAATAACAA
1 AAAAATAATAATAA-AA
*
63088 AAAAATAATACTAAAA
1 AAAAATAATAATAAAA
63104 ATAAACATAATAA
1 A-AAA-ATAATAA
63117 ATCAAGGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 3 0.12
17 16 0.64
18 6 0.24
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.20
Consensus pattern (16 bp):
AAAAATAATAATAAAA
Found at i:63103 original size:14 final size:16
Alignment explanation
Indices: 63069--63107 Score: 57
Period size: 14 Copynumber: 2.6 Consensus size: 16
63059 ATCAATGATG
63069 CTAAAAATAATAATAA
1 CTAAAAATAATAATAA
63085 C-AAAAA-AATAAT-A
1 CTAAAAATAATAATAA
63098 CTAAAAATAA
1 CTAAAAATAA
63108 ACATAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 7 0.33
16 1 0.05
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (16 bp):
CTAAAAATAATAATAA
Found at i:73953 original size:21 final size:19
Alignment explanation
Indices: 73925--73963 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
73915 ATTTTTTTTA
*
73925 TTTTCTTTTATTTGTTTCAC
1 TTTTCTTTT-GTTGTTTCAC
73945 TTTTACTTTTGTTGTTTCA
1 TTTT-CTTTTGTTGTTTCA
73964 AATTCCTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.10, C:0.13, G:0.08, T:0.69
Consensus pattern (19 bp):
TTTTCTTTTGTTGTTTCAC
Found at i:76898 original size:31 final size:30
Alignment explanation
Indices: 76863--76921 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 30
76853 AATCACTTAG
76863 AAAAG-GAAAATGAGAAA-AAGAAAGAAAAAAT
1 AAAAGAGAAAA-GA-AAAGAAGAAA-AAAAAAT
76894 AAAAGAGAAAAGAAAAGAAGAAAAAAAA
1 AAAAGAGAAAAGAAAAGAAGAAAAAAAA
76922 TGTTTGCTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
30 8 0.31
31 13 0.50
32 5 0.19
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (30 bp):
AAAAGAGAAAAGAAAAGAAGAAAAAAAAAT
Found at i:76901 original size:24 final size:25
Alignment explanation
Indices: 76869--76923 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 25
76859 TTAGAAAAGG
76869 AAAATGAGAAAA-AGAAAGAA-AAAA
1 AAAATGAGAAAAGA-AAAGAAGAAAA
76893 TAAAA-GAGAAAAGAAAAGAAGAAAA
1 -AAAATGAGAAAAGAAAAGAAGAAAA
76918 AAAATG
1 AAAATG
76924 TTTGCTATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
24 17 0.63
25 10 0.37
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.05
Consensus pattern (25 bp):
AAAATGAGAAAAGAAAAGAAGAAAA
Found at i:97164 original size:49 final size:50
Alignment explanation
Indices: 97045--97176 Score: 117
Period size: 50 Copynumber: 2.7 Consensus size: 50
97035 AGATATGATA
* ** * *
97045 TTGTAGCTTCATCTTGCTCCACTGCATTTTCAAGGAGATGAGATTTTCTT
1 TTGTAGCTTCATCTTGTTCCACTGCAACTTCAAAGAGATGAGATTTTCTG
* * * * *
97095 TTGTAACTT-TTCTCTATTCCACTTCAACTTCAAATAGATG-GA-TTTCATG
1 TTGTAGCTTCATCT-TGTTCCACTGCAACTTCAAAGAGATGAGATTTTC-TG
* *
97144 TTGTAGCTTCATCTTGTTCCATTGCATCTTCAA
1 TTGTAGCTTCATCTTGTTCCACTGCAACTTCAA
97177 GGAAATAAGA
Statistics
Matches: 63, Mismatches: 16, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
48 4 0.06
49 29 0.46
50 30 0.48
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (50 bp):
TTGTAGCTTCATCTTGTTCCACTGCAACTTCAAAGAGATGAGATTTTCTG
Found at i:97216 original size:99 final size:98
Alignment explanation
Indices: 97042--97569 Score: 316
Period size: 100 Copynumber: 5.3 Consensus size: 98
97032 ATGAGATATG
* * * * ** * **
97042 ATATTGTAGCTTCATCTTGCTCCACTGCATTTTCAAGGAGATGAGATTTTCTTTTGTAACTTTTC
1 ATATTGTAGCTTCATCTTGCTCCACTGCATCTTCAAGGAAATAAGA-TTGCTACTGTAGCTTTAA
*
97107 TCT-ATTCCACTTCAACTTCA-AATAGATGGATTTC
65 TCTGA-TCCACTACAACTTCAGAATAGA-GGATTTC
* * * *
97141 ATGTTGTAGCTTCATCTTGTTCCATTGCATCTTCAAGGAAATAAGATTCGCTACTGTAGCTTCAA
1 ATATTGTAGCTTCATCTTGCTCCACTGCATCTTCAAGGAAATAAGATT-GCTACTGTAGCTTTAA
* * * * * *
97206 TCTGATCCACTAGAGCTTTAGGGATATAGGATTTG
65 TCTGATCCACTACAACTTCA-GAATAGAGGATTTC
* * * *
97241 ATATTTTAGCTTCATCTTGCTCCACTGCATCTTCAGGGAAATAAAAGTTGCTACTTTAGCTTTAA
1 ATATTGTAGCTTCATCTTGCTCCACTGCATCTTCAAGGAAATAAGA-TTGCTACTGTAGCTTTAA
* * * * * *
97306 TCTGATCCACTGCATCTTTAGGGATATAGGATTTG
65 TCTGATCCACTACAACTTCA-GAATAGAGGATTTC
* * * * * * ** *
97341 ATGTTGTAACTTCATCTTGGTTCACTG---CTTCAAGGAAATAATATTTGGTGTTGTAG-TTTCA
1 ATATTGTAGCTTCATCTTGCTCCACTGCATCTTCAAGGAAATAAGA-TTGCTACTGTAGCTTTAA
* * * * *
97402 -CTCCATTTCACTACAACTTCAGGGATATAGGATTTG
65 TCT-GA-TCCACTACAACTTCA-GAATAGAGGATTTC
* * * * * * * ** *
97438 ATGTTGTAGCTTCATCTTACTCTACTACCTCTTC-AGAGAGATAAGTTTGCTACCATAGCTTCAA
1 ATATTGTAGCTTCATCTTGCTCCACTGCATCTTCAAG-GAAATAAGATTGCTACTGTAGCTTTAA
* * * * *
97502 TCTGATCCATTACATCTTCAGGGATATAGGATTTG
65 TCTGATCCACTACAACTTCA-GAATAGAGGATTTC
* * * *
97537 ATGTTGTAACTTCATCTTCCTCCACTACATCTT
1 ATATTGTAGCTTCATCTTGCTCCACTGCATCTT
97570 TAGGGAGATT
Statistics
Matches: 343, Mismatches: 73, Indels: 26
0.78 0.17 0.06
Matches are distributed among these distances:
95 2 0.01
96 5 0.01
97 69 0.20
98 2 0.01
99 128 0.37
100 129 0.38
101 8 0.02
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (98 bp):
ATATTGTAGCTTCATCTTGCTCCACTGCATCTTCAAGGAAATAAGATTGCTACTGTAGCTTTAAT
CTGATCCACTACAACTTCAGAATAGAGGATTTC
Found at i:97270 original size:100 final size:100
Alignment explanation
Indices: 97040--97569 Score: 475
Period size: 99 Copynumber: 5.3 Consensus size: 100
97030 AGATGAGATA
* * * * * ** * *
97040 TGATATTGTAGCTTCATCTTGCTCCACTGCATTTTCAAGGAGATGAGATTTTCTTTTGTAACTTT
1 TGATGTTGTAGCTTCATCTTGCTCCACTGCATCTTCAAGGAAATAAGATTTGCTACTGTAGCTTC
** * * * *
97105 TCTCT-ATTCCACTTCAACTTCA--AATAGATGGATT
66 AATCTGA-TCCACTACATCTTCAGGGATATA-GGATT
* * * *
97139 TCATGTTGTAGCTTCATCTTGTTCCATTGCATCTTCAAGGAAATAAGATTCGCTACTGTAGCTTC
1 TGATGTTGTAGCTTCATCTTGCTCCACTGCATCTTCAAGGAAATAAGATTTGCTACTGTAGCTTC
* * *
97204 AATCTGATCCACTAGAGCTTTAGGGATATAGGATT
66 AATCTGATCCACTACATCTTCAGGGATATAGGATT
* * * * * * *
97239 TGATATTTTAGCTTCATCTTGCTCCACTGCATCTTCAGGGAAATAAAAGTTGCTACTTTAGCTTT
1 TGATGTTGTAGCTTCATCTTGCTCCACTGCATCTTCAAGGAAATAAGATTTGCTACTGTAGCTTC
* *
97304 AATCTGATCCACTGCATCTTTAGGGATATAGGATT
66 AATCTGATCCACTACATCTTCAGGGATATAGGATT
* * * * * ** *
97339 TGATGTTGTAACTTCATCTTGGTTCACTG---CTTCAAGGAAATAATATTTGGTGTTGTAGTTTC
1 TGATGTTGTAGCTTCATCTTGCTCCACTGCATCTTCAAGGAAATAAGATTTGCTACTGTAGCTTC
* * * *
97401 ACTC-CATTTCACTACAACTTCAGGGATATAGGATT
66 AATCTGA-TCCACTACATCTTCAGGGATATAGGATT
* * * * * **
97436 TGATGTTGTAGCTTCATCTTACTCTACTACCTCTTC-AGAGAGATAAG-TTTGCTACCATAGCTT
1 TGATGTTGTAGCTTCATCTTGCTCCACTGCATCTTCAAG-GAAATAAGATTTGCTACTGTAGCTT
*
97499 CAATCTGATCCATTACATCTTCAGGGATATAGGATT
65 CAATCTGATCCACTACATCTTCAGGGATATAGGATT
* * *
97535 TGATGTTGTAACTTCATCTTCCTCCACTACATCTT
1 TGATGTTGTAGCTTCATCTTGCTCCACTGCATCTT
97570 TAGGGAGATT
Statistics
Matches: 344, Mismatches: 78, Indels: 18
0.78 0.18 0.04
Matches are distributed among these distances:
96 1 0.00
97 74 0.22
99 138 0.40
100 127 0.37
101 4 0.01
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (100 bp):
TGATGTTGTAGCTTCATCTTGCTCCACTGCATCTTCAAGGAAATAAGATTTGCTACTGTAGCTTC
AATCTGATCCACTACATCTTCAGGGATATAGGATT
Found at i:97367 original size:50 final size:50
Alignment explanation
Indices: 97134--97600 Score: 272
Period size: 50 Copynumber: 9.4 Consensus size: 50
97124 TCAAATAGAT
* * * * * *
97134 GGATTTCATGTTGTAGCTTCATCTTGTTCCATTGCATCTTCAAGGAAATA
1 GGATTTGATGTTGTAGCTTCATCTTGATCCACTACATCTTCAGGGATATA
* * * ** * * *
97184 AGATTCGCTACTGTAGCTTCAATC-TGATCCACTAGAGCTTTAGGGATATA
1 GGATTTGATGTTGTAGCTTC-ATCTTGATCCACTACATCTTCAGGGATATA
* * * * *
97234 GGATTTGATATTTTAGCTTCATCTTGCTCCACTGCATCTTCAGGGAAATA
1 GGATTTGATGTTGTAGCTTCATCTTGATCCACTACATCTTCAGGGATATA
** * * * * * *
97284 AAAGTTGCTACTT-TAGCTTTAATC-TGATCCACTGCATCTTTAGGGATATA
1 GGATTTGAT-GTTGTAGC-TTCATCTTGATCCACTACATCTTCAGGGATATA
* * * * * *
97334 GGATTTGATGTTGTAACTTCATCTTGGTTCACT---GCTTCAAGGAAATA
1 GGATTTGATGTTGTAGCTTCATCTTGATCCACTACATCTTCAGGGATATA
** * * ** * *
97381 ATATTTGGTGTTGTAGTTTCA-CTCCATTTCACTACAACTTCAGGGATATA
1 GGATTTGATGTTGTAGCTTCATCTTGA-TCCACTACATCTTCAGGGATATA
* * * *
97431 GGATTTGATGTTGTAGCTTCATCTT-ACTCTACTACCTCTTCAGAGAGATA
1 GGATTTGATGTTGTAGCTTCATCTTGA-TCCACTACATCTTCAGGGATATA
* * **** *
97481 AG-TTTGCTACCATAGCTTCAATC-TGATCCATTACATCTTCAGGGATATA
1 GGATTTGATGTTGTAGCTTC-ATCTTGATCCACTACATCTTCAGGGATATA
* ** * *
97530 GGATTTGATGTTGTAACTTCATCTTCCTCCACTACATCTTTAGGGAGATTA
1 GGATTTGATGTTGTAGCTTCATCTTGATCCACTACATCTTCAGGGATA-TA
*
97581 -GATTTGGTGTTGTAGCTTCA
1 GGATTTGATGTTGTAGCTTCA
97601 CTCCATTCCA
Statistics
Matches: 306, Mismatches: 95, Indels: 32
0.71 0.22 0.07
Matches are distributed among these distances:
46 2 0.01
47 32 0.10
49 45 0.15
50 213 0.70
51 14 0.05
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (50 bp):
GGATTTGATGTTGTAGCTTCATCTTGATCCACTACATCTTCAGGGATATA
Found at i:106018 original size:53 final size:52
Alignment explanation
Indices: 105883--106070 Score: 191
Period size: 52 Copynumber: 3.6 Consensus size: 52
105873 GTGGGATTTG
* ** *
105883 TATACTCATGATGACACAAAGACATCGGACCTCTT-AATCCGTAAAGGATCCA
1 TATACTCACGATGACACTTAGTCATCGGACCT-TTAAATCCGTAAAGGATCCA
* * * * * * *
105935 TATATTCATGATGTCACTTAATCATCGGACCTTTAAAACCATAAAGGATTTCA
1 TATACTCACGATGACACTTAGTCATCGGACCTTTAAATCCGTAAAGGA-TCCA
* * * *
105988 TAAACTCACGATGGCACTTAGTCATCGGACC-TCATAATCGGTAAAGGATCCA
1 TATACTCACGATGACACTTAGTCATCGGACCTTTA-AATCCGTAAAGGATCCA
*
106040 TTTACTCACGATGACACTTAGTCATCGGACC
1 TATACTCACGATGACACTTAGTCATCGGACC
106071 CTTTTTTTCA
Statistics
Matches: 111, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
51 2 0.02
52 70 0.63
53 39 0.35
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (52 bp):
TATACTCACGATGACACTTAGTCATCGGACCTTTAAATCCGTAAAGGATCCA
Found at i:112940 original size:53 final size:52
Alignment explanation
Indices: 112753--112997 Score: 172
Period size: 52 Copynumber: 4.7 Consensus size: 52
112743 ATTCCACTTC
* * * * * ***
112753 ATTCATATACTCACGATGACACATAGCCACCAGACCTTATAATCCA-CGTGG
1 ATTCATATACTCACGATGACACTTAGTCATCGGACCTCATAATCCATAAAGG
** * ** * **
112804 TATTTGTATACTCATGATGACACAGAGTCATCGGACCTCTTAATCTGTAAAGG
1 -ATTCATATACTCACGATGACACTTAGTCATCGGACCTCATAATCCATAAAGG
* * * * * *
112857 ATCCATATGA-TCATGATGTCACTTAGTCATCGGACCATTA-AATTCATTAAGG
1 ATTCATAT-ACTCACGATGACACTTAGTCATCGGACC-TCATAATCCATAAAGG
* * ** *
112909 ATTTCATATACTGACGTTGACACTTAGTCATCAAACCTCATAATCCGTAAAGG
1 A-TTCATATACTCACGATGACACTTAGTCATCGGACCTCATAATCCATAAAGG
* *
112962 ATTCATTTATTCACGATGACACTTAGTCATCGGACC
1 ATTCATATACTCACGATGACACTTAGTCATCGGACC
112998 CTTTTTTTCA
Statistics
Matches: 144, Mismatches: 43, Indels: 12
0.72 0.22 0.06
Matches are distributed among these distances:
52 104 0.72
53 40 0.28
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (52 bp):
ATTCATATACTCACGATGACACTTAGTCATCGGACCTCATAATCCATAAAGG
Found at i:116710 original size:25 final size:25
Alignment explanation
Indices: 116681--116728 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
116671 GGTTTTAAAA
*
116681 TTTTTAAGTTTC-ATTTTTATTTATG
1 TTTTTAA-TTTCAATTTTAATTTATG
116706 TTTTTAATTTCAATTTTAATTTA
1 TTTTTAATTTCAATTTTAATTTA
116729 ATTCATTGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (25 bp):
TTTTTAATTTCAATTTTAATTTATG
Found at i:119133 original size:23 final size:23
Alignment explanation
Indices: 119107--119153 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
119097 CCATGAAAAG
*
119107 TTAGTTTCTCTTGATATTAGACA
1 TTAGTTTCTCTTAATATTAGACA
119130 TTAGTTTCTCTTAATATTAGACA
1 TTAGTTTCTCTTAATATTAGACA
119153 T
1 T
119154 GCACGAAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.28, C:0.13, G:0.11, T:0.49
Consensus pattern (23 bp):
TTAGTTTCTCTTAATATTAGACA
Found at i:127997 original size:194 final size:194
Alignment explanation
Indices: 127632--128086 Score: 578
Period size: 194 Copynumber: 2.3 Consensus size: 194
127622 TAGTGATTTG
* * * *
127632 AAACCA-ATGCGATGGTTGAGGTACCGCATATGTTACAAGTCCTCGACAGCTCATGTGAGCAGCA
1 AAACCATAT-CGATGGTTGAGGTACCACATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCA
* * * *
127696 TCGTGAGTCAAGAAATGAGAAATGAATCCAAGAATGGATTATAGGCCCTATGATGGTTGGGATTT
65 TCGTGAGTCAAGAAAAGAGAAATGAAACCAAGAATGGATTATAGGCCCTAAGATGGCTGGGATTT
**
127761 ATACATAAGTGCACATTCTCGACAGCTCGTGTGAGCAGCATCGTTAAGGAAACAG-TTATATTCA
130 ATACATAAGTGCACATTCTCGACAGCTCGTGTGAGCAGCATCGTT-AGGAAACAGTTTATAGACA
127825 TA
194 -A
* * * *
127827 GAAACCGTATCGATGGTTGAGGTACCACATATGTTGTGAGTCCTCGACAACTCGTGTGAGTAGCA
1 -AAACCATATCGATGGTTGAGGTACCACATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCA
*
127892 TCGTGAGTCAA-AAAAGAGATATGAAACCAA-AATGGATTATAGGCCCTAAGATGGCTGGGATTT
65 TCGTGAGTCAAGAAAAGAGAAATGAAACCAAGAATGGATTATAGGCCCTAAGATGGCTGGGATTT
* * * * ** *
127955 ATGCTTGAA-TGCATATTCTCGACAGCTCGTGTGAGTAGCATCGTTAGGGGATAGTTTATAGACA
130 ATACAT-AAGTGCACATTCTCGACAGCTCGTGTGAGCAGCATCGTTAGGAAACAGTTTATAGACA
128019 A
194 A
* * *** *
128020 ACACCATATTGATGGCCAAGGTACCACATATGTTGCGAGTCCTCGACAGCTCGTGTAAGCAGCAT
1 AAACCATATCGATGGTTGAGGTACCACATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCAT
128085 CG
66 CG
128087 GGTACTGGTA
Statistics
Matches: 224, Mismatches: 32, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
192 57 0.25
193 7 0.03
194 76 0.34
195 18 0.08
196 64 0.29
197 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (194 bp):
AAACCATATCGATGGTTGAGGTACCACATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCAT
CGTGAGTCAAGAAAAGAGAAATGAAACCAAGAATGGATTATAGGCCCTAAGATGGCTGGGATTTA
TACATAAGTGCACATTCTCGACAGCTCGTGTGAGCAGCATCGTTAGGAAACAGTTTATAGACAA
Found at i:130136 original size:27 final size:25
Alignment explanation
Indices: 130097--130159 Score: 74
Period size: 27 Copynumber: 2.5 Consensus size: 25
130087 GAACTGAAAT
130097 AAATAAATAAAAGGACTAAATTAAA
1 AAATAAATAAAAGGACTAAATTAAA
**
130122 AAATATAATATAAAGGGTTAAATTAAA
1 AAATA-AATA-AAAGGACTAAATTAAA
*
130149 ATA-AAATAAAA
1 AAATAAATAAAA
130160 ATGTAGGGAC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
24 3 0.09
25 9 0.27
26 5 0.15
27 16 0.48
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.24
Consensus pattern (25 bp):
AAATAAATAAAAGGACTAAATTAAA
Found at i:133619 original size:2 final size:2
Alignment explanation
Indices: 133612--133637 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
133602 AAATCTACTA
133612 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
133638 TTCATTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:135135 original size:26 final size:26
Alignment explanation
Indices: 135074--135142 Score: 93
Period size: 26 Copynumber: 2.7 Consensus size: 26
135064 TTATTTACAA
135074 TATGTAGGATTCTTACATGAGTCTCG
1 TATGTAGGATTCTTACATGAGTCTCG
* * * *
135100 CATATTGGATTTTTACATGAGTCTCG
1 TATGTAGGATTCTTACATGAGTCTCG
*
135126 TATGCAGGATTCTTACA
1 TATGTAGGATTCTTACA
135143 CGTGTTTTCT
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (26 bp):
TATGTAGGATTCTTACATGAGTCTCG
Found at i:137619 original size:198 final size:198
Alignment explanation
Indices: 137281--137700 Score: 626
Period size: 198 Copynumber: 2.1 Consensus size: 198
137271 AAATCAAACA
* * * * *
137281 CCGTTTGTTTTAAACGAAACTAGACTTTGATACGGTTATAGGGATATAAGGATCATTTCCTATTT
1 CCGTTTGTTCTAAACAAAACTAGAATTTCATACGGTTATAGGGATATAAGGATCACTTCCTATTT
* *
137346 TATCTTGTGCAATTTTTGGTGATTTTTAAAAGTCACTACTAAATATGTTTTATAAGAATTCTGCT
66 TACCTTGTGCAATTTTTGGTGATTTTTAAAAGTCACTACTAAATATGTTTTATAAGAATTCTACT
*
137411 GCCAGATTTTTATGACCTTTCAACACTCAAAAATTCATATCTTGTAAAATACAAATTGAAATA-A
131 GCCAGATTTTTATGACCTTTCAACACTCAAAAATTCATATCTTGTAAAATACAAATCGAAA-ACA
137475 ATCT
195 ATCT
*
137479 CCGTTTGTTCTAAACAAAACTAGAATTTCATACGGTTATAGGGATATAAGGCTCACTTCCTATTT
1 CCGTTTGTTCTAAACAAAACTAGAATTTCATACGGTTATAGGGATATAAGGATCACTTCCTATTT
* * * *
137544 TACCTTGTGCAGTTTTTGGTGATTTTTCAAAGTCAGTACTAAATCTGTTTTATAAGAATTCTACT
66 TACCTTGTGCAATTTTTGGTGATTTTTAAAAGTCACTACTAAATATGTTTTATAAGAATTCTACT
* * * * * * *
137609 GCTAGATTTTTGTGATCTTTCAACACTCTAAATTTCATATCTTTTAAACTACAAATCGAAAACAA
131 GCCAGATTTTTATGACCTTTCAACACTCAAAAATTCATATCTTGTAAAATACAAATCGAAAACAA
137674 TCT
196 TCT
**
137677 TTGTTTGTTCTAAACAAAACTAGA
1 CCGTTTGTTCTAAACAAAACTAGA
137701 CTAACTGACA
Statistics
Matches: 199, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
197 1 0.01
198 198 0.99
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.39
Consensus pattern (198 bp):
CCGTTTGTTCTAAACAAAACTAGAATTTCATACGGTTATAGGGATATAAGGATCACTTCCTATTT
TACCTTGTGCAATTTTTGGTGATTTTTAAAAGTCACTACTAAATATGTTTTATAAGAATTCTACT
GCCAGATTTTTATGACCTTTCAACACTCAAAAATTCATATCTTGTAAAATACAAATCGAAAACAA
TCT
Found at i:139008 original size:22 final size:22
Alignment explanation
Indices: 138963--139009 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
138953 AGTTTTTCCT
*
138963 TAGTTTAATTTCACTTTCATTTG
1 TAGTTTAATTT-ACTTTCAATTG
138986 TAGTTTAGATTT-CTTTCAATTG
1 TAGTTTA-ATTTACTTTCAATTG
139008 TA
1 TA
139010 ATTTTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 11 0.50
23 7 0.32
24 4 0.18
ACGTcount: A:0.23, C:0.11, G:0.11, T:0.55
Consensus pattern (22 bp):
TAGTTTAATTTACTTTCAATTG
Found at i:139857 original size:22 final size:22
Alignment explanation
Indices: 139827--139888 Score: 97
Period size: 22 Copynumber: 2.8 Consensus size: 22
139817 AGGCGGTCAT
* *
139827 TCGTTGGCTCCAACATCTTAGA
1 TCGTCGGCTCCACCATCTTAGA
139849 TCGTCGGCTCCACCATCTTAGA
1 TCGTCGGCTCCACCATCTTAGA
*
139871 TCGTCAGCTCCACCATCT
1 TCGTCGGCTCCACCATCT
139889 CAAATCTCCG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.19, C:0.35, G:0.16, T:0.29
Consensus pattern (22 bp):
TCGTCGGCTCCACCATCTTAGA
Found at i:139902 original size:22 final size:22
Alignment explanation
Indices: 139827--139902 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
139817 AGGCGGTCAT
* * * *
139827 TCGTTGGCTCCAACATCTTAGA
1 TCGTCGGCTCCACCATCTCAAA
* *
139849 TCGTCGGCTCCACCATCTTAGA
1 TCGTCGGCTCCACCATCTCAAA
*
139871 TCGTCAGCTCCACCATCTCAAA
1 TCGTCGGCTCCACCATCTCAAA
139893 TC-TCCGGCTC
1 TCGT-CGGCTC
139903 AACTGTTATT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
21 1 0.02
22 46 0.98
ACGTcount: A:0.20, C:0.37, G:0.16, T:0.28
Consensus pattern (22 bp):
TCGTCGGCTCCACCATCTCAAA
Done.