Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008314.1 Kokia drynarioides strain JFW-HI SEQ_122979, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4954
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31


Found at i:878 original size:13 final size:12

Alignment explanation


    Indices: 860--918  Score: 55
    Period size: 13  Copynumber: 4.7  Consensus size: 12

        850 TGGTCAAAGA

                         
        860 AAAGTCAACGATC
          1 AAAGTCAACG-TC

                    **  
        873 AAAGTCAAAATC
          1 AAAGTCAACGTC

                     *   
        885 AAAGGTCAAAGTC
          1 AAA-GTCAACGTC

                  *      
        898 AAAGTCGACTGTC
          1 AAAGTCAAC-GTC

                    
        911 AAAGTCAA
          1 AAAGTCAA

        919 TGAGTCTGGT


Statistics
Matches: 38,  Mismatches: 6, Indels: 4
        0.79            0.12        0.08

Matches are distributed among these distances:
  12    9  0.24
  13   29  0.76

ACGTcount: A:0.47, C:0.19, G:0.17, T:0.17


Consensus pattern (12 bp):   
AAAGTCAACGTC

Found at i:898 original size:6 final size:6

Alignment explanation


    Indices: 860--918  Score: 55
    Period size: 6  Copynumber: 9.3  Consensus size: 6

        850 TGGTCAAAGA

                     *               *                           **   
        860 AAAGTC AACGATC AAAGTC AAAATC AAAGGTC AAAGTC AAAGTC GACTGTC
          1 AAAGTC AAAG-TC AAAGTC AAAGTC AAA-GTC AAAGTC AAAGTC -AAAGTC

                     
        911 AAAGTC AA
          1 AAAGTC AA

        919 TGAGTCTGGT


Statistics
Matches: 42,  Mismatches: 8, Indels: 6
        0.75            0.14        0.11

Matches are distributed among these distances:
   6   28  0.67
   7   14  0.33

ACGTcount: A:0.47, C:0.19, G:0.17, T:0.17


Consensus pattern (6 bp):   
AAAGTC
Done.