Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008322.1 Kokia drynarioides strain JFW-HI SEQ_122987, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 859

Length: 1433
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.31


Found at i:1416 original size:22 final size:22

Alignment explanation


    Indices: 1391--1433  Score: 52
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1381 TGGCAACTCT

                *                  
       1391 ATTTTCGA-TTTTAAAATAAAAA
          1 ATTTGCGACTTTTAAAA-AAAAA

                 *               
       1413 ATTTGGGACTTTTAAAAAAAA
          1 ATTTGCGACTTTTAAAAAAAA


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  22   10  0.56
  23    8  0.44

ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37


Consensus pattern (22 bp):   
ATTTGCGACTTTTAAAAAAAAA
Done.