Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008323.1 Kokia drynarioides strain JFW-HI SEQ_122988, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3411
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34


Found at i:791 original size:2 final size:2

Alignment explanation


    Indices: 784--814  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

        774 GTTTTCCCAA

                                                 *        
        784 AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

        815 CATACTTGAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45


Consensus pattern (2 bp):   
AT

Done.