Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008324.1 Kokia drynarioides strain JFW-HI SEQ_122989, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7078
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33


Found at i:801 original size:25 final size:26

Alignment explanation


    Indices: 711--809  Score: 148
    Period size: 26  Copynumber: 3.8  Consensus size: 26

        701 AAATAAGAGA

                    *                 
        711 ATATTTAGTAGGCTTCGAGCCGGTGT
          1 ATATTTAGCAGGCTTCGAGCCGGTGT

                           *          
        737 ATATTTAGCAGGCTTTGAGCCGGTGT
          1 ATATTTAGCAGGCTTCGAGCCGGTGT

                                 *    
        763 ATATTTAGCAGGCTTCGAGCCAGTG-
          1 ATATTTAGCAGGCTTCGAGCCGGTGT

                                   
        788 A-ATGTTAGCAGGCTTCGAGCCG
          1 ATAT-TTAGCAGGCTTCGAGCCG

        810 ATGAGTGTTT


Statistics
Matches: 67,  Mismatches: 5, Indels: 3
        0.89            0.07        0.04

Matches are distributed among these distances:
  24    2  0.03
  25   18  0.27
  26   47  0.70

ACGTcount: A:0.21, C:0.18, G:0.30, T:0.30


Consensus pattern (26 bp):   
ATATTTAGCAGGCTTCGAGCCGGTGT

Done.