Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008330.1 Kokia drynarioides strain JFW-HI SEQ_122996, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3478
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36


Found at i:2783 original size:26 final size:26

Alignment explanation


    Indices: 2753--2854  Score: 154
    Period size: 26  Copynumber: 4.0  Consensus size: 26

       2743 AAATAAGAGA

                    *                 
       2753 ATATTTAGTAGGCTTCGAGCCGGTGT
          1 ATATTTAGCAGGCTTCGAGCCGGTGT

                           *          
       2779 ATATTTAGCAGGCTTTGAGCCGGTGT
          1 ATATTTAGCAGGCTTCGAGCCGGTGT

                                 *    
       2805 ATATTTAGCAGGCTTCGAGCCAGTG-
          1 ATATTTAGCAGGCTTCGAGCCGGTGT

                                      
       2830 A-ATGTTAGCAGGCTTCGAGCCGGTG
          1 ATAT-TTAGCAGGCTTCGAGCCGGTG

       2855 AGTGTTTAGC


Statistics
Matches: 70,  Mismatches: 5, Indels: 3
        0.90            0.06        0.04

Matches are distributed among these distances:
  24    2  0.03
  25   21  0.30
  26   47  0.67

ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30


Consensus pattern (26 bp):   
ATATTTAGCAGGCTTCGAGCCGGTGT

Done.