Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008332.1 Kokia drynarioides strain JFW-HI SEQ_122998, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6854
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:2705 original size:26 final size:25

Alignment explanation


    Indices: 2656--2706  Score: 66
    Period size: 26  Copynumber: 2.0  Consensus size: 25

       2646 TTCTAAAAAC

                            * **     
       2656 GAAATGAAAATAACTAGAGTTTAAA
          1 GAAATGAAAATAACTAAAACTTAAA

                                      
       2681 GAAATGAAAAATAACTAAAACTTAAA
          1 GAAATG-AAAATAACTAAAACTTAAA

       2707 TTACAAGGGG


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  25    6  0.27
  26   16  0.73

ACGTcount: A:0.61, C:0.06, G:0.12, T:0.22


Consensus pattern (25 bp):   
GAAATGAAAATAACTAAAACTTAAA
Done.