Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008335.1 Kokia drynarioides strain JFW-HI SEQ_123001, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5554
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:2318 original size:30 final size:29

Alignment explanation


    Indices: 2252--2327  Score: 77
    Period size: 29  Copynumber: 2.6  Consensus size: 29

       2242 TTAAATTAAT

                                         
       2252 AAAA-ATAAAAATATATTTTAATTTTCTA
          1 AAAATATAAAAATATATTTTAATTTTCTA

                         *                 
       2280 AAAATATAAAAATTTGATTTT-ATCTTT-TA
          1 AAAATATAAAAATAT-ATTTTAAT-TTTCTA

                      *   *    
       2309 AAAATTATAATAATCTATT
          1 AAAA-TATAAAAATATATT

       2328 AAAATAATGA


Statistics
Matches: 41,  Mismatches: 3, Indels: 7
        0.80            0.06        0.14

Matches are distributed among these distances:
  28    4  0.10
  29   20  0.49
  30   17  0.41

ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45


Consensus pattern (29 bp):   
AAAATATAAAAATATATTTTAATTTTCTA
Done.