Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008337.1 Kokia drynarioides strain JFW-HI SEQ_123003, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4273
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32


Found at i:1557 original size:9 final size:9

Alignment explanation


    Indices: 1543--1569  Score: 54
    Period size: 9  Copynumber: 3.0  Consensus size: 9

       1533 CCTTTTCTAT

                     
       1543 TTATATGAG
          1 TTATATGAG

                     
       1552 TTATATGAG
          1 TTATATGAG

                     
       1561 TTATATGAG
          1 TTATATGAG

       1570 AAACAACATG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44


Consensus pattern (9 bp):   
TTATATGAG
Done.