Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008338.1 Kokia drynarioides strain JFW-HI SEQ_123004, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2884
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.33


Found at i:423 original size:9 final size:9

Alignment explanation


    Indices: 411--437  Score: 54
    Period size: 9  Copynumber: 3.0  Consensus size: 9

        401 CATGTTGTTT

                     
        411 CTCATATAA
          1 CTCATATAA

                     
        420 CTCATATAA
          1 CTCATATAA

                     
        429 CTCATATAA
          1 CTCATATAA

        438 ATAGAAAAGG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33


Consensus pattern (9 bp):   
CTCATATAA

Found at i:2025 original size:25 final size:26

Alignment explanation


    Indices: 1986--2045  Score: 70
    Period size: 25  Copynumber: 2.3  Consensus size: 26

       1976 TTAATTAAAT

                                       
       1986 TTAATATTAAGATAATCACT-TTAATA
          1 TTAATATTAAGATAAT-ACTATTAATA

                      *             * 
       2012 TTAA-ATTAATATAATACTATTAAGA
          1 TTAATATTAAGATAATACTATTAATA

             *       
       2037 TAAATATTA
          1 TTAATATTA

       2046 TATTAAATTA


Statistics
Matches: 29,  Mismatches: 3, Indels: 4
        0.81            0.08        0.11

Matches are distributed among these distances:
  24    3  0.10
  25   18  0.62
  26    8  0.28

ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42


Consensus pattern (26 bp):   
TTAATATTAAGATAATACTATTAATA
Done.