Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01008340.1 Kokia drynarioides strain JFW-HI SEQ_123006, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2393
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Found at i:570 original size:216 final size:215
Alignment explanation
Indices: 2--2393 Score: 2651
Period size: 216 Copynumber: 11.1 Consensus size: 215
1 A
* * * *
2 AAAAAAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCATACAA-AGACAAAGAGAGAAACAATTC
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTC
* * *
66 TCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTGCAAAATGACAAACAATTTAGGA-
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA-GAC
* * * *
130 CAAATGATGCTACTTGCCAAGCATGGAAT-ATTCGAAAAATTGCTCGAAGGAATGGATCGTCTTG
129 CAAATGATGCGATTTCCCAAGCATGGAATGA-TCGAAAAATTGCTCAAAGGAATGGATCGTCTTG
**
194 AATACTTTAAGGATTCGAAGTTAT
193 AATACTTT-AGGAACCGAAGTTAT
* *
218 AAAAGAACTTGTAAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAATCCAAGAACAAATAGAGAA
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG--T-T-C--G--TCCAAGAACAAAGAGAGAA
* * * *
283 ACAATTCTCACATAAATATGTTTTTATTTCAAAGACCAAAACTTGTATACAAAATGACAAACTAT
58 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * *
348 TTAGACCAAATGATGCGATTTCCCAAGGATGGAATGATCGGAAAATTGCTCAAAGGAATGGATCT
123 TTAGACCAAATGATGCGATTTCCCAAGCATGGAATGATCGAAAAATTGCTCAAAGGAATGGATCG
* * * *
413 TGTCGAATACCTTAGGAAACTGAAGTTA-
188 TCTTGAATACTTTAGG-AACCGAAGTTAT
** * *
441 AATATTAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
1 AA-AAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
* * * * * *
506 TCACATAAATAATTTTTTAATTTAACGACCAAAACTTGTTTGCAAAAGGACAAACTATTTAGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
** * ** * * * *
571 AAATGATGCGATTTGTCGAGCGCGAAAT-ATTTGAAAAATTGCTGAAATGAATGGATCGTCTTGA
130 AAATGATGCGATTTCCCAAGCATGGAATGA-TCGAAAAATTGCTCAAAGGAATGGATCGTCTTGA
* *
635 ATACTTTAAGGATCCAAAGTTAT
194 ATACTTT-AGGAACCGAAGTTAT
* * * * * *
658 AAAAGAACTAGTAAAAATTTGACAAGTTCGGAAGTTCGCCCAAGAACAAAGAGAGGAACAATACT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
*
723 CACGTAAATAAGTTTTTAATTCAAAGACCAAAGCTTGTTTACAAAATGACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * ***
788 AATGATGTGATTT-CTAGAGCATGCAATGTTCGAAAATTTGCTCAAAACTATGGATCGTCTTGAA
131 AATGATGCGATTTCCCA-AGCATGGAATGATCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAA
* * *
852 TAC-TGAGGATCCGTAGTTAT
195 TACTTTAGGAACCGAAGTTAT
* * * * * *
872 CAAAGAACTAGTAAAAG-TTGACAAGCTCGGAAGTTCGTCCAAGAACAAGGAGAGAAACCATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* * * *
936 CACATAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGTC--A-TATTTAGATCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * *
998 AATGATGCGATTTCCCAAGCATGGAATGCTC-AGAAAATTGCTCTAAGGGACGGATCTTGTTGAA
131 AATGATGCGATTTCCCAAGCATGGAATGATCGA-AAAATTGCTCAAAGGAATGGATCGTCTTGAA
*
1062 TACTTTAGGGAACCGAAGTTAA
195 TACTTTA-GGAACCGAAGTTAT
* ** *
1084 AAAATAACTCGTAAAAGTTTGACAAGTTTAAAAGTTTG-CACATAG-ACAAAGAGAGAAACAATT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTC-CA-AGAACAAAGAGAGAAACAATT
* ** * *
1147 CTCTCGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGGAAAACGACAAACTATTTAGGC
64 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAC
* * *
1212 CAAATGATGCGATTTCCCAAGCATAGAATGTTCAAAAAATTGCTCAAAGGAATGGATCGTCTTGA
129 CAAATGATGCGATTTCCCAAGCATGGAATGATCGAAAAATTGCTCAAAGGAATGGATCGTCTTGA
* *
1277 ATACTTTAAGGATCCAAAGTTAT
194 ATACTTT-AGGAACCGAAGTTAT
* * *
1300 AAAAGAACTAGTAAAAGTTT---AA---C--AAGTTCGTCCAAGATCAAAGGGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* * * ** * *
1357 AACATAAATAAGTTTTTAATTCAAATAAGAAAACTTGTATACAAAATGACAAACTATTTACACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * *
1422 ATTGATGTGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTCAAAGGAATGAATCTTGTTGAAT
131 AATGATGCGATTTCCCAAGCATGGAATGATCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
* * *
1487 ACTTTGGGGAACTGAAGTTAA
196 ACTTT-AGGAACCGAAGTTAT
* * * * * *
1508 AAAATATCTCGTAAAAATTTGACAGGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
*
1573 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTATACAAAATGACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * ** * * * * * * * *
1638 AATGATGTGATTTCCCATGGGTGGAATGTTTGGAAAATTGCCCAATGAAATGGATCTTGTTGAAT
131 AATGATGCGATTTCCCAAGCATGGAATGATCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
** *
1703 ACTTTAGGGAACTAAAGTTAA
196 ACTTTA-GGAACCGAAGTTAT
* * *
1724 AAAATAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* * * * * **
1789 CACGTAAATAAGTTTTTAATTCAACGACCAAAACTTATTTGCAAAAGGACAAACTGTTTAGATAA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * *
1854 AATGATACGATTTGCCGAGCACGGAAT-ATTC-AGAAAATTGCTGAAAGGAATGGATCGTCTTGA
131 AATGATGCGATTTCCCAAGCATGGAATGA-TCGA-AAAATTGCTCAAAGGAATGGATCGTCTTGA
*
1917 ATACTTTAAGGATCCGAAGTTAT
194 ATACTTT-AGGAACCGAAGTTAT
* *
1940 AAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGACCAAGAACAAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
2005 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * ** * * * * *
2070 AATGATGCGATTTCCCAAGCATTGATTGCCCAAAAAATTACTCTAAGGAATGGATCTTGTTGAAT
131 AATGATGCGATTTCCCAAGCATGGAATGATCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
* *
2135 ACTTTAGAGAACCAAAGTTAA
196 ACTTTAG-GAACCGAAGTTAT
* * ** *
2156 AAAATAACTCGTAAAAGTTTGACATGTTCGAAAGTTAATCAAAGAACAAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* * * *
2221 CACGTAAATAAGTTCTTAATTTAAAGACCGAAACCTT-TTTGCAAAATGACAAACTATTTAGACC
66 CACGTAAATAAGTTTTTAATTCAAAGACC-AAAACTTGTTTACAAAATGACAAACTATTTAGACC
* * ** **
2285 AAATGATACGATTTCCCGAGCATGGAAT-ATTTAGAAAATTGCTCGAAA-GAATATATCGTCTTG
130 AAATGATGCGATTTCCCAAGCATGGAATGATCGA-AAAATTGCTC-AAAGGAATGGATCGTCTTG
*
2348 AATACTTTAAGGATCCGAAGTTAT
193 AATACTTT-AGGAACCGAAGTTAT
*
2372 AAAAGAACTAGTAAAAGTTTGA
1 AAAAGAACTCGTAAAAGTTTGA
Statistics
Matches: 1830, Mismatches: 295, Indels: 102
0.82 0.13 0.05
Matches are distributed among these distances:
207 2 0.00
208 167 0.09
209 2 0.00
210 60 0.03
211 6 0.00
212 26 0.01
213 167 0.09
214 30 0.02
215 6 0.00
216 1158 0.63
217 19 0.01
218 2 0.00
219 1 0.00
220 2 0.00
221 1 0.00
222 1 0.00
223 7 0.00
224 171 0.09
225 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (215 bp):
AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
AATGATGCGATTTCCCAAGCATGGAATGATCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
ACTTTAGGAACCGAAGTTAT
Found at i:2324 original size:648 final size:649
Alignment explanation
Indices: 2--2393 Score: 2977
Period size: 648 Copynumber: 3.7 Consensus size: 649
1 A
* * * * *
2 AAAAAAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCATACAAAG-ACAAAGAGAGAAACAATTC
1 AAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTC-GACCAAGAACAAAGAGAGAAACAATTC
* * *
66 TCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTGCAAAATGACAAACAATTTAGGA-
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA-GAC
* * * * *
130 CAAATGATGCTACTTGCCAAGCATGGAATATTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA
129 CAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGA
** * *
195 ATACTTTA-AGGATTCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAAGTTTGTCC
194 ATACTTTAGA-GAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG--T-T--
* * *
259 AAGAATCCAAGAACAAATAGAGAAACAATTCTCACATAAATATGTTTTTATTTCAAAGACCAAAA
253 ---AATCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAA
* *
324 CTTGTATACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGGATGGAATGA-TCG
315 CTTGTATACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAAT-ATTCA
* * * * * * *
388 GAAAATTGCT-CAAAGGAATGGATCTTGTCGAATACCTTAGGAAACTGAAGTTAAATATTAACTC
379 GAAAATTGCTCCAAAGAAATGGATCTTGTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTC
*
452 GTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACATAAATA
444 GTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA
* *
517 ATTTTTTAATTTAACGACCAAAACTTGTTTGCAAAAGGACAAACTATTTAGACCAAATGATGCGA
509 AGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAAGGACAAACTATTTAGACCAAATGATGCGA
* * * * *
582 TTTGTCGAGCGCGAAATATT-TGAAAAATTGCTGAAATGAATGGATCGTCTTGAATACTTTAAGG
574 TTTGCCGAGCACGGAATATTCAG-AAAATTGCTGAAAGGAATGGATCGTCTTGAATACTTTAAGG
646 ATCCAAAGTTAT
638 ATCCAAAGTTAT
* * * * *
658 AAAAGAACTAGTAAAAATTTGACAAGTTCGGAAGTTCGCCCAAGAACAAAGAGAGGAACAATACT
1 AAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGACCAAGAACAAAGAGAGAAACAATTCT
*
723 CACGTAAATAAGTTTTTAATTCAAAGACCAAAGCTTGTTTACAAAATGACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * ***
788 AATGATGTGATTT-CTAGAGCATGCAATGTTCGAAAATTTGCTCAAAACTATGGATCGTCTTGAA
131 AATGATGCGATTTCCCA-AGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAA
* * * ** * * * **
852 TAC-TGAG-GATCCGTAGTTATCAAAGAACTAGTAAAAG-TTGACAAGCTCGGAAGTTCGTCCAA
195 TACTTTAGAGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTAATCCAA
* * * *
914 GAACAAGGAGAGAAACCATTCTCACATAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACA
260 GAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTATACA
* * **
979 AAATGTC--A-TATTTAGATCAAATGATGCGATTTCCCAAGCATGGAATGCTCAGAAAATTGCT-
325 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATATTCAGAAAATTGCTC
* ** *
1040 CTAAGGGACGGATCTTGTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTG
390 CAAAGAAATGGATCTTGTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTG
** * *
1105 ACAAGTTTAAAAGTTTG-CACATAG-ACAAAGAGAGAAACAATTCTCTCGTAAATAAGTTTTTAA
455 ACAAGTTTGGAAGTTCGTC-CA-AGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * * * * *
1168 TTCAAAGACCAAAACTTGTTTGGAAAACGACAAACTATTTAGGCCAAATGATGCGATTTCCCAAG
518 TTCAACGACCAAAACTTGTTTGCAAAAGGACAAACTATTTAGACCAAATGATGCGATTTGCCGAG
** * * *
1233 CATAGAATGTTCAAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTT
583 CACGGAATATTCAGAAAATTGCTGAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTT
1298 AT
648 AT
* * *
1300 AAAAGAACTAGTAAAAGTTT---AA---C--AAGTTCGTCCAAGATCAAAGGGAGAAACAATTCT
1 AAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGACCAAGAACAAAGAGAGAAACAATTCT
* * * ** * *
1357 AACATAAATAAGTTTTTAATTCAAATAAGAAAACTTGTATACAAAATGACAAACTATTTACACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * *
1422 ATTGATGTGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTCAAAGGAATGAATCTTGTTGAAT
131 AATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
* * * * * * * * * **
1487 ACTTTGGGGAACTGAAGTTAAAAAATATCTCGTAAAAATTTGACAGGTTTGGAAGTTCGTCCAAG
196 ACTTTAGAGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTAATCCAAG
*
1552 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTATACAA
261 AACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTATACAA
* * ** * **
1617 AATGACAAACTATTTAGACCAAATGATGTGATTTCCCATGGGTGGAATGTTTGGAAAATTGC-CC
326 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATATTCAGAAAATTGCTCC
* **
1681 AATGAAATGGATCTTGTTGAATACTTTAGGGAACTAAAGTTAAAAAATAACTCGTAAAAGTTTGA
391 AAAGAAATGGATCTTGTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGA
1746 CAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
456 CAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * ** *
1811 AACGACCAAAACTTATTTGCAAAAGGACAAACTGTTTAGATAAAATGATACGATTTGCCGAGCAC
521 AACGACCAAAACTTGTTTGCAAAAGGACAAACTATTTAGACCAAATGATGCGATTTGCCGAGCAC
*
1876 GGAATATTCAGAAAATTGCTGAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCGAAGTTAT
586 GGAATATTCAGAAAATTGCTGAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTAT
1940 AAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGACCAAGAACAAAGAGAGAAACAATTCT
1 AAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGACCAAGAACAAAGAGAGAAACAATTCT
2005 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * ** * * * * *
2070 AATGATGCGATTTCCCAAGCATTGATTGCCCAAAAAATTACTCTAAGGAATGGATCTTGTTGAAT
131 AATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
* * * *
2135 ACTTTAGAGAACCAAAGTTAAAAAATAACTCGTAAAAGTTTGACATGTTCGAAAGTTAATCAAAG
196 ACTTTAGAGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTAATCCAAG
* * * * * *
2200 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTCTTAATTTAAAGACCGAAACCTT-TTTGCA
261 AACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACC-AAAACTTGTATACA
* * *
2264 AAATGACAAACTATTTAGACCAAATGATACGATTTCCCGAGCATGGAATATTTAGAAAATTGCTC
325 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATATTCAGAAAATTGCTC
* * * * * * * *
2329 GAAAGAATAT--ATCGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTT
390 CAAAGAA-ATGGATCTTGTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTT
2392 GA
454 GA
Statistics
Matches: 1491, Mismatches: 216, Indels: 66
0.84 0.12 0.04
Matches are distributed among these distances:
634 139 0.09
635 4 0.00
636 22 0.01
637 88 0.06
639 5 0.00
640 291 0.20
641 2 0.00
642 289 0.19
643 5 0.00
645 69 0.05
646 1 0.00
648 349 0.23
649 12 0.01
650 3 0.00
651 1 0.00
653 14 0.01
654 26 0.02
655 10 0.01
656 161 0.11
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (649 bp):
AAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGACCAAGAACAAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
AATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
ACTTTAGAGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTAATCCAAG
AACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTATACAA
AATGACAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATATTCAGAAAATTGCTCC
AAAGAAATGGATCTTGTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGA
CAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
AACGACCAAAACTTGTTTGCAAAAGGACAAACTATTTAGACCAAATGATGCGATTTGCCGAGCAC
GGAATATTCAGAAAATTGCTGAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTAT
Done.