Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008342.1 Kokia drynarioides strain JFW-HI SEQ_123008, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3154
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36


Found at i:1449 original size:23 final size:24

Alignment explanation


    Indices: 1423--1478  Score: 78
    Period size: 24  Copynumber: 2.4  Consensus size: 24

       1413 TTGAATATAC

                                    
       1423 TCACGAACAT-TAAACGAACATGT
          1 TCACGAACATATAAACGAACATGT

                          **        
       1446 TCACGAACATATAATTGAACATGT
          1 TCACGAACATATAAACGAACATGT

                *    
       1470 TCACAAACA
          1 TCACGAACA

       1479 ATGTTAATGA


Statistics
Matches: 29,  Mismatches: 3, Indels: 1
        0.88            0.09        0.03

Matches are distributed among these distances:
  23   10  0.34
  24   19  0.66

ACGTcount: A:0.45, C:0.21, G:0.11, T:0.23


Consensus pattern (24 bp):   
TCACGAACATATAAACGAACATGT

Found at i:1563 original size:25 final size:25

Alignment explanation


    Indices: 1531--1586  Score: 103
    Period size: 25  Copynumber: 2.2  Consensus size: 25

       1521 AAATATTATT

                                     
       1531 TTAATATTATTATAAGAAAATATCA
          1 TTAATATTATTATAAGAAAATATCA

                    *                
       1556 TTAATATTTTTATAAGAAAATATCA
          1 TTAATATTATTATAAGAAAATATCA

                  
       1581 TTAATA
          1 TTAATA

       1587 AATAAACGAG


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  25   30  1.00

ACGTcount: A:0.50, C:0.04, G:0.04, T:0.43


Consensus pattern (25 bp):   
TTAATATTATTATAAGAAAATATCA
Done.