Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000835.1 Kokia drynarioides strain JFW-HI SEQ_111930, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2470
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34


Found at i:679 original size:15 final size:15

Alignment explanation


    Indices: 659--698  Score: 80
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        649 TGCTCTACTC

                           
        659 TGGTTGCAACTTTAG
          1 TGGTTGCAACTTTAG

                           
        674 TGGTTGCAACTTTAG
          1 TGGTTGCAACTTTAG

                      
        689 TGGTTGCAAC
          1 TGGTTGCAAC

        699 ATACATTAAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   25  1.00

ACGTcount: A:0.20, C:0.15, G:0.28, T:0.38


Consensus pattern (15 bp):   
TGGTTGCAACTTTAG
Done.