genome.fa.s8351.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01008351.1 Kokia drynarioides strain JFW-HI SEQ_123018, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  284908

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5102--5138	18	2.1	18	94	0	65	62	0	13	24	1.31
5828--5949	43	2.8	43	78	2	129	26	19	22	31	1.98
18528--18584	29	2.0	29	85	0	78	15	3	22	57	1.53
21791--21835	20	2.2	20	84	0	54	24	24	17	33	1.96
21805--21859	13	4.2	13	86	4	65	18	20	18	43	1.88
21805--21856	27	1.9	27	92	0	86	19	21	19	40	1.92
22242--22298	29	2.0	29	86	6	80	15	1	26	56	1.50
34730--34775	22	2.1	22	100	0	92	36	4	13	45	1.63
36190--36292	40	2.6	40	88	0	161	34	16	27	21	1.95
36779--36808	15	2.0	15	93	0	51	20	10	13	56	1.65
37140--37232	24	3.8	24	79	1	96	24	20	24	30	1.99
39204--39238	16	2.2	16	94	0	61	25	17	37	20	1.94
39631--39680	6	8.5	6	82	10	50	72	2	2	24	1.06
44193--44221	3	9.7	3	100	0	58	31	0	0	68	0.89
45219--45360	63	2.3	63	97	0	266	40	19	14	26	1.89
54705--54741	18	2.1	18	100	0	74	16	16	16	51	1.77
55279--55321	11	3.6	11	79	14	50	83	0	16	0	0.64
55321--55365	2	23.0	2	90	4	74	46	0	0	53	1.00
57780--57821	22	2.0	21	85	4	57	64	4	9	21	1.42
59879--60340	231	2.0	231	98	0	888	18	22	13	45	1.84
67616--67655	19	2.1	19	90	0	62	47	12	7	32	1.69
87227--87280	28	1.9	28	85	7	74	31	9	12	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97907--97937	15	2.1	14	94	5	53	45	0	29	25	1.54
113454--113522	36	1.9	36	96	0	129	31	1	21	44	1.61
113812--113962	43	3.5	43	82	1	176	23	20	20	35	1.96
114098--114146	19	2.5	20	80	9	57	36	0	12	51	1.40
121173--121239	32	2.1	32	94	0	116	43	11	10	34	1.76
126481--126522	22	2.0	21	85	4	57	64	0	2	33	1.07
126631--126656	8	3.2	8	100	0	52	53	0	0	46	1.00
126738--126779	15	2.9	15	80	16	52	45	4	0	50	1.23
126721--126813	13	7.0	13	75	15	66	43	2	1	53	1.19
127262--127310	22	2.3	21	85	3	62	71	20	2	6	1.18
128801--128825	4	6.2	4	100	0	50	48	52	0	0	1.00
130529--130574	19	2.5	18	82	6	56	41	0	6	52	1.27
138351--138383	17	1.9	17	88	11	50	12	6	3	78	1.04
165365--165401	3	12.0	3	88	5	56	62	0	35	2	1.10
165788--165848	26	2.7	21	73	22	68	24	11	13	50	1.74
169412--169450	21	1.9	21	89	5	62	41	10	20	28	1.85
176943--177071	33	3.9	33	83	0	132	34	22	15	27	1.94
176943--177071	66	2.0	66	81	3	152	34	22	15	27	1.94
180355--180406	25	2.1	25	88	0	77	30	21	21	26	1.98
183725--183760	12	3.0	12	87	0	54	75	0	8	16	1.04
183725--183759	17	2.1	17	89	10	54	77	0	5	17	0.96
183727--183765	12	3.2	12	85	0	51	74	2	10	12	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217516--217662	73	2.0	73	100	0	294	37	16	14	31	1.89
238905--239097	51	3.8	50	86	3	251	31	22	13	31	1.93
238905--239097	102	1.9	103	88	3	291	31	22	13	31	1.93
239937--239988	23	2.4	21	78	9	59	40	13	0	46	1.43
245912--246096	51	3.6	51	81	5	212	30	23	14	31	1.94
246708--246734	11	2.5	11	100	0	54	33	7	0	59	1.25
259464--259569	30	3.5	30	81	0	131	18	14	23	43	1.87
259742--259799	30	2.0	29	86	3	80	18	10	27	43	1.83
262668--262710	22	2.0	22	86	4	61	51	0	6	41	1.29
263662--263709	19	2.6	17	84	12	60	66	2	0	31	1.03
263662--263717	18	3.0	18	77	15	60	67	1	0	30	1.01
265216--265243	14	2.0	14	100	0	56	42	0	0	57	0.99
279592--279659	34	2.0	34	88	0	100	17	41	1	39	1.59

Tables:   1

The End!