Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008354.1 Kokia drynarioides strain JFW-HI SEQ_123021, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8152
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:667 original size:19 final size:19

Alignment explanation


    Indices: 643--682  Score: 53
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        633 AGCTATAACC

                               
        643 AAAATTTATATAAAAAAAT
          1 AAAATTTATATAAAAAAAT

                   *   *   *   
        662 AAAATTTTTATTAAACAAT
          1 AAAATTTATATAAAAAAAT

              
        681 AA
          1 AA

        683 CAATATGTTC


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35


Consensus pattern (19 bp):   
AAAATTTATATAAAAAAAT

Found at i:752 original size:47 final size:48

Alignment explanation


    Indices: 672--766  Score: 131
    Period size: 47  Copynumber: 2.0  Consensus size: 48

        662 AAAATTTTTA

                               *        *        *          
        672 TTAAACAATAACAATATGTTCCCATTAATATCTAATGGTTATAAGATT
          1 TTAAACAATAACAATATGTCCCCATTAAAATCTAATGATTATAAGATT

                                    *                        
        720 TTAAA-AATAACAATATAG-CCCCGTTAAAATCTAATGATTATAAGATT
          1 TTAAACAATAACAATAT-GTCCCCATTAAAATCTAATGATTATAAGATT

        767 AAAAAAAAAA


Statistics
Matches: 42,  Mismatches: 4, Indels: 3
        0.86            0.08        0.06

Matches are distributed among these distances:
  47   36  0.86
  48    6  0.14

ACGTcount: A:0.44, C:0.13, G:0.08, T:0.35


Consensus pattern (48 bp):   
TTAAACAATAACAATATGTCCCCATTAAAATCTAATGATTATAAGATT

Done.