Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008357.1 Kokia drynarioides strain JFW-HI SEQ_123024, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8896
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37


Found at i:4699 original size:17 final size:18

Alignment explanation


    Indices: 4677--4720  Score: 63
    Period size: 18  Copynumber: 2.5  Consensus size: 18

       4667 TAGTTAAATT

                              
       4677 TAAAAATTTA-AAAAAAA
          1 TAAAAATTTAGAAAAAAA

                    *         
       4694 TAAAAATTAAGAAAAAAA
          1 TAAAAATTTAGAAAAAAA

               *     
       4712 TAATAATTT
          1 TAAAAATTT

       4721 CATACGATTT


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  17    9  0.39
  18   14  0.61

ACGTcount: A:0.70, C:0.00, G:0.02, T:0.27


Consensus pattern (18 bp):   
TAAAAATTTAGAAAAAAA

Done.