Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008362.1 Kokia drynarioides strain JFW-HI SEQ_123029, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4031
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:2264 original size:11 final size:10

Alignment explanation


    Indices: 2246--2281  Score: 54
    Period size: 10  Copynumber: 3.5  Consensus size: 10

       2236 CAACATATAT

                      
       2246 TTTTTTTTTC
          1 TTTTTTTTTC

              *       
       2256 TTCTTTTTTC
          1 TTTTTTTTTC

                       
       2266 TTTATTTTTTC
          1 TTT-TTTTTTC

                 
       2277 TTTTT
          1 TTTTT

       2282 AAATATTTCT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  10   13  0.57
  11   10  0.43

ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86


Consensus pattern (10 bp):   
TTTTTTTTTC
Done.