Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008373.1 Kokia drynarioides strain JFW-HI SEQ_123040, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13108
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.35


Found at i:9911 original size:29 final size:31

Alignment explanation


    Indices: 9828--9911  Score: 82
    Period size: 31  Copynumber: 2.8  Consensus size: 31

       9818 ATTAAATCAA

                   *   * *       *         
       9828 AATTAAATTTTTAAGTATACATTTGAACCAC
          1 AATTAAAGTTTCATGTATACAATTGAACCAC

                 *          *  *     *     
       9859 AATTAGAGTTTCATGTGTATAATTGCACCA-
          1 AATTAAAGTTTCATGTATACAATTGAACCAC

                                    
       9889 AATTAAAG-TTCATGTATACAATT
          1 AATTAAAGTTTCATGTATACAATT

       9912 ACACATTAAA


Statistics
Matches: 42,  Mismatches: 11, Indels: 2
        0.76            0.20        0.04

Matches are distributed among these distances:
  29   13  0.31
  30    7  0.17
  31   22  0.52

ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38


Consensus pattern (31 bp):   
AATTAAAGTTTCATGTATACAATTGAACCAC
Done.