Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008382.1 Kokia drynarioides strain JFW-HI SEQ_123050, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12122
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33


Found at i:11283 original size:18 final size:17

Alignment explanation


    Indices: 11250--11287  Score: 53
    Period size: 16  Copynumber: 2.3  Consensus size: 17

      11240 CAAAGTTCTC

                             
      11250 TTCTTTCTCATCTTTTT
          1 TTCTTTCTCATCTTTTT

                              
      11267 TTCTTTCT--TCTTCTTT
          1 TTCTTTCTCATCTT-TTT

                 
      11283 TTCTT
          1 TTCTT

      11288 CGGCCTTCTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  15    4  0.20
  16    8  0.40
  17    8  0.40

ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74


Consensus pattern (17 bp):   
TTCTTTCTCATCTTTTT
Done.