Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008385.1 Kokia drynarioides strain JFW-HI SEQ_123053, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2378
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.36


Found at i:1150 original size:40 final size:40

Alignment explanation


    Indices: 1099--1179  Score: 153
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       1089 TCTCTTATAA

                                                    
       1099 AAGGGAGGGTGAAGCCTAAACAAAGCATTCAAGTTTTCTT
          1 AAGGGAGGGTGAAGCCTAAACAAAGCATTCAAGTTTTCTT

                                   *                
       1139 AAGGGAGGGTGAAGCCTAAACAAGGCATTCAAGTTTTCTT
          1 AAGGGAGGGTGAAGCCTAAACAAAGCATTCAAGTTTTCTT

             
       1179 A
          1 A

       1180 CCAATTTTCT


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  40   40  1.00

ACGTcount: A:0.35, C:0.15, G:0.26, T:0.25


Consensus pattern (40 bp):   
AAGGGAGGGTGAAGCCTAAACAAAGCATTCAAGTTTTCTT
Done.