Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008386.1 Kokia drynarioides strain JFW-HI SEQ_123054, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12527
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30


Found at i:4922 original size:18 final size:18

Alignment explanation


    Indices: 4875--4922  Score: 69
    Period size: 18  Copynumber: 2.7  Consensus size: 18

       4865 GCTTGTCCTC

                       *      
       4875 AAGCAAACAAAACAAGAA
          1 AAGCAAACAAAGCAAGAA

                *  *          
       4893 AAGCGAATAAAGCAAGAA
          1 AAGCAAACAAAGCAAGAA

                        
       4911 AAGCAAACAAAG
          1 AAGCAAACAAAG

       4923 GAGCTTGAGT


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   25  1.00

ACGTcount: A:0.67, C:0.15, G:0.17, T:0.02


Consensus pattern (18 bp):   
AAGCAAACAAAGCAAGAA

Found at i:9534 original size:22 final size:22

Alignment explanation


    Indices: 9504--9545  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       9494 TTGAGACTGA

                *      *          
       9504 CGTCGATGTCATGACAAAGAAC
          1 CGTCCATGTCACGACAAAGAAC

                          *     
       9526 CGTCCATGTCACGAGAAAGA
          1 CGTCCATGTCACGACAAAGA

       9546 GTACAGAATT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   17  1.00

ACGTcount: A:0.36, C:0.24, G:0.24, T:0.17


Consensus pattern (22 bp):   
CGTCCATGTCACGACAAAGAAC
Done.