Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008392.1 Kokia drynarioides strain JFW-HI SEQ_123060, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4589
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35


Found at i:419 original size:18 final size:18

Alignment explanation


    Indices: 397--440  Score: 70
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        387 TCTCAAAATC

                              
        397 CTCTCTTCTCTCTCCCCT
          1 CTCTCTTCTCTCTCCCCT

            *              *  
        415 TTCTCTTCTCTCTCCTCT
          1 CTCTCTTCTCTCTCCCCT

                    
        433 CTCTCTTC
          1 CTCTCTTC

        441 AAGGTCAATC


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   23  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (18 bp):   
CTCTCTTCTCTCTCCCCT

Found at i:428 original size:9 final size:9

Alignment explanation


    Indices: 397--440  Score: 52
    Period size: 9  Copynumber: 4.9  Consensus size: 9

        387 TCTCAAAATC

                     
        397 CTCTCTTCT
          1 CTCTCTTCT

                 **  
        406 CTCTCCCCT
          1 CTCTCTTCT

            *        
        415 TTCTCTTCT
          1 CTCTCTTCT

                 *   
        424 CTCTCCTCT
          1 CTCTCTTCT

                    
        433 CTCTCTTC
          1 CTCTCTTC

        441 AAGGTCAATC


Statistics
Matches: 27,  Mismatches: 8, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
   9   27  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (9 bp):   
CTCTCTTCT
Done.