Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008408.1 Kokia drynarioides strain JFW-HI SEQ_123077, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2842
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.35


Found at i:1444 original size:15 final size:15

Alignment explanation


    Indices: 1414--1447  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       1404 GCTTGGAAGA

                       *   
       1414 TGCGAGCACTGGTGT
          1 TGCGAGCACTGATGT

                      *    
       1429 TGCGAGCACTTATGT
          1 TGCGAGCACTGATGT

                
       1444 TGCG
          1 TGCG

       1448 GACACACACG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29


Consensus pattern (15 bp):   
TGCGAGCACTGATGT
Done.