Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000842.1 Kokia drynarioides strain JFW-HI SEQ_111941, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1675
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:848 original size:76 final size:76

Alignment explanation


    Indices: 755--909  Score: 292
    Period size: 76  Copynumber: 2.0  Consensus size: 76

        745 GTACCTAAAG

                  *                                                       *  
        755 AAAAATTATATTAATCTTGCGACACTGCCATGATGCCCCTTATGGAAGACATTTTGGTAAACTAA
          1 AAAAATGATATTAATCTTGCGACACTGCCATGATGCCCCTTATGGAAGACATTTTGGTAAACCAA

                       
        820 GGATTGCTGCT
         66 GGATTGCTGCT

                                                                             
        831 AAAAATGATATTAATCTTGCGACACTGCCATGATGCCCCTTATGGAAGACATTTTGGTAAACCAA
          1 AAAAATGATATTAATCTTGCGACACTGCCATGATGCCCCTTATGGAAGACATTTTGGTAAACCAA

                       
        896 GGATTGCTGCT
         66 GGATTGCTGCT

               
        907 AAA
          1 AAA

        910 GTCTTACAAT


Statistics
Matches: 77,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  76   77  1.00

ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30


Consensus pattern (76 bp):   
AAAAATGATATTAATCTTGCGACACTGCCATGATGCCCCTTATGGAAGACATTTTGGTAAACCAA
GGATTGCTGCT
Done.