Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008420.1 Kokia drynarioides strain JFW-HI SEQ_123091, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3489
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


Found at i:2790 original size:6 final size:6

Alignment explanation


    Indices: 2779--2828  Score: 57
    Period size: 6  Copynumber: 8.3  Consensus size: 6

       2769 GCTTATTTGG

                                  *         **                      
       2779 AATTTA AATTTA AATTT- ATTTTGA AATAAA AATTTA AATTTA AATTTA
          1 AATTTA AATTTA AATTTA AATTT-A AATTTA AATTTA AATTTA AATTTA

              
       2827 AA
          1 AA

       2829 AGTTTAATTG


Statistics
Matches: 36,  Mismatches: 6, Indels: 4
        0.78            0.13        0.09

Matches are distributed among these distances:
   5    4  0.11
   6   30  0.83
   7    2  0.06

ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46


Consensus pattern (6 bp):   
AATTTA

Found at i:2797 original size:23 final size:24

Alignment explanation


    Indices: 2760--2820  Score: 70
    Period size: 24  Copynumber: 2.6  Consensus size: 24

       2750 AAATTTATTG

                     **        *   *
       2760 TAAATTTAAGCTTA-TTTGGAATT
          1 TAAATTTAAATTTATTTTGAAATA

                                    
       2783 TAAATTTAAATTTATTTTGAAATA
          1 TAAATTTAAATTTATTTTGAAATA

            *             
       2807 AAAATTTAAATTTA
          1 TAAATTTAAATTTA

       2821 AATTTAAAAG


Statistics
Matches: 32,  Mismatches: 5, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  23   12  0.38
  24   20  0.62

ACGTcount: A:0.44, C:0.02, G:0.07, T:0.48


Consensus pattern (24 bp):   
TAAATTTAAATTTATTTTGAAATA
Done.