Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008426.1 Kokia drynarioides strain JFW-HI SEQ_123097, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16708
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32


Found at i:12893 original size:48 final size:48

Alignment explanation


    Indices: 12817--12914  Score: 151
    Period size: 48  Copynumber: 2.0  Consensus size: 48

      12807 CAAAAGGGAT

                      *            *                        
      12817 CTTAGAAGATGTGCTGGTCCAACTGAGAAGCTTTATTATTAACCATCC
          1 CTTAGAAGATATGCTGGTCCAACAGAGAAGCTTTATTATTAACCATCC

                  *               *       *                 
      12865 CTTAGAGGATATGCTGGTCCAAGAGAGAAGTTTTATTATTAACCATCC
          1 CTTAGAAGATATGCTGGTCCAACAGAGAAGCTTTATTATTAACCATCC

              
      12913 CT
          1 CT

      12915 AAATGTACTT


Statistics
Matches: 45,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  48   45  1.00

ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Consensus pattern (48 bp):   
CTTAGAAGATATGCTGGTCCAACAGAGAAGCTTTATTATTAACCATCC
Done.