Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008428.1 Kokia drynarioides strain JFW-HI SEQ_123099, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12317
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:11561 original size:33 final size:33

Alignment explanation


    Indices: 11506--11573  Score: 95
    Period size: 33  Copynumber: 2.0  Consensus size: 33

      11496 TAAGTTTATT

                                               
      11506 TATATTTATTTTTTTTAAAATTTAA-ATATGAATA
          1 TATATTTATTTTTTTT-AAATTTAATAT-TGAATA

                                              
      11540 TATATTTATATTTTTTT-AATTTAATATTGAATA
          1 TATATTTAT-TTTTTTTAAATTTAATATTGAATA

             
      11573 T
          1 T

      11574 TTAATAATTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 5
        0.86            0.00        0.14

Matches are distributed among these distances:
  33   14  0.44
  34   11  0.34
  35    7  0.22

ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59


Consensus pattern (33 bp):   
TATATTTATTTTTTTTAAATTTAATATTGAATA

Found at i:11610 original size:15 final size:16

Alignment explanation


    Indices: 11590--11632  Score: 52
    Period size: 15  Copynumber: 2.8  Consensus size: 16

      11580 ATTTTATTAT

                            
      11590 TTTTATTTATTAA-AA
          1 TTTTATTTATTAATAA

                     *      
      11605 TTTTATTTAGTAATAA
          1 TTTTATTTATTAATAA

             *    *     
      11621 TATTATATATTA
          1 TTTTATTTATTA

      11633 CTACAGATTA


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  15   12  0.52
  16   11  0.48

ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58


Consensus pattern (16 bp):   
TTTTATTTATTAATAA
Done.