Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008429.1 Kokia drynarioides strain JFW-HI SEQ_123100, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3304
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Found at i:284 original size:18 final size:17

Alignment explanation


    Indices: 261--308  Score: 60
    Period size: 18  Copynumber: 2.7  Consensus size: 17

        251 CATTTTGTTA

                           *  
        261 TGGTTGCATTTGCTCTTG
          1 TGGTTGCATTTGCT-ATG

                              
        279 TGGTTGCATCTTGCTATG
          1 TGGTTGCAT-TTGCTATG

               *        
        297 TGGCTGCATTTG
          1 TGGTTGCATTTG

        309 ATCAAGAAAT


Statistics
Matches: 27,  Mismatches: 2, Indels: 3
        0.84            0.06        0.09

Matches are distributed among these distances:
  17    3  0.11
  18   19  0.70
  19    5  0.19

ACGTcount: A:0.08, C:0.17, G:0.29, T:0.46


Consensus pattern (17 bp):   
TGGTTGCATTTGCTATG
Done.