Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008441.1 Kokia drynarioides strain JFW-HI SEQ_123113, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4405
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37


Found at i:2641 original size:22 final size:22

Alignment explanation


    Indices: 2613--2671  Score: 100
    Period size: 22  Copynumber: 2.7  Consensus size: 22

       2603 ATTAGAGTAA

                               ** 
       2613 TCATCTCTAATTTCATCATGGT
          1 TCATCTCTAATTTCATCATAAT

                                  
       2635 TCATCTCTAATTTCATCATAAT
          1 TCATCTCTAATTTCATCATAAT

                           
       2657 TCATCTCTAATTTCA
          1 TCATCTCTAATTTCA

       2672 ACAGATTCCT


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  22   35  1.00

ACGTcount: A:0.27, C:0.24, G:0.03, T:0.46


Consensus pattern (22 bp):   
TCATCTCTAATTTCATCATAAT

Found at i:2651 original size:12 final size:12

Alignment explanation


    Indices: 2613--2671  Score: 54
    Period size: 12  Copynumber: 5.2  Consensus size: 12

       2603 ATTAGAGTAA

                        
       2613 TCATCTCTAATT
          1 TCATCTCTAATT

                  *  ** 
       2625 TCATC-AT-GGT
          1 TCATCTCTAATT

                        
       2635 TCATCTCTAATT
          1 TCATCTCTAATT

                  *     
       2647 TCATC-ATAA-T
          1 TCATCTCTAATT

                        
       2657 TCATCTCTAATT
          1 TCATCTCTAATT

               
       2669 TCA
          1 TCA

       2672 ACAGATTCCT


Statistics
Matches: 35,  Mismatches: 8, Indels: 8
        0.69            0.16        0.16

Matches are distributed among these distances:
  10   12  0.34
  11    8  0.23
  12   15  0.43

ACGTcount: A:0.27, C:0.24, G:0.03, T:0.46


Consensus pattern (12 bp):   
TCATCTCTAATT
Done.