Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000845.1 Kokia drynarioides strain JFW-HI SEQ_111946, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5164
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36

Warning! 30 characters in sequence are not A, C, G, or T


Found at i:4658 original size:3 final size:3

Alignment explanation


    Indices: 4650--4678  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

       4640 TTCTTTAGAG

                                                  
       4650 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA

       4679 AAGACTTCTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31


Consensus pattern (3 bp):   
AAT

Done.