Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008462.1 Kokia drynarioides strain JFW-HI SEQ_123137, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1700
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:1110 original size:12 final size:12

Alignment explanation


    Indices: 1090--1121  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

       1080 CAACTACACT

                        
       1090 GGCTGGGGTTGG
          1 GGCTGGGGTTGG

              *         
       1102 GGTTGGGGTTGG
          1 GGCTGGGGTTGG

                    
       1114 GGCTGGGG
          1 GGCTGGGG

       1122 CTCCTCCAAG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.00, C:0.06, G:0.69, T:0.25


Consensus pattern (12 bp):   
GGCTGGGGTTGG
Done.