Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008463.1 Kokia drynarioides strain JFW-HI SEQ_123138, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1706
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30


Found at i:1099 original size:6 final size:6

Alignment explanation


    Indices: 1090--1129  Score: 53
    Period size: 6  Copynumber: 6.7  Consensus size: 6

       1080 CAACTACACT

                            *      *      *               
       1090 GGCTGG GGCTGG GGTTGG GGTTGG GGTTGG GGCTGG GGCT
          1 GGCTGG GGCTGG GGCTGG GGCTGG GGCTGG GGCTGG GGCT

       1130 CCTCCAAGTC


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   32  1.00

ACGTcount: A:0.00, C:0.10, G:0.65, T:0.25


Consensus pattern (6 bp):   
GGCTGG

Found at i:1114 original size:12 final size:12

Alignment explanation


    Indices: 1093--1127  Score: 61
    Period size: 12  Copynumber: 2.9  Consensus size: 12

       1083 CTACACTGGC

                        
       1093 TGGGGCTGGGGT
          1 TGGGGCTGGGGT

                 *      
       1105 TGGGGTTGGGGT
          1 TGGGGCTGGGGT

                       
       1117 TGGGGCTGGGG
          1 TGGGGCTGGGG

       1128 CTCCTCCAAG


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.00, C:0.06, G:0.69, T:0.26


Consensus pattern (12 bp):   
TGGGGCTGGGGT

Done.