Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008465.1 Kokia drynarioides strain JFW-HI SEQ_123140, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9378
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:3234 original size:6 final size:6

Alignment explanation


    Indices: 3223--3251  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

       3213 ATGCTGTAGC

                                             
       3223 GTTGGT GTTGGT GTTGGT GTTGGT GTTGG
          1 GTTGGT GTTGGT GTTGGT GTTGGT GTTGG

       3252 GTGGGAAGTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48


Consensus pattern (6 bp):   
GTTGGT

Found at i:5329 original size:20 final size:18

Alignment explanation


    Indices: 5293--5347  Score: 51
    Period size: 20  Copynumber: 2.9  Consensus size: 18

       5283 TTTACTACCA

                              
       5293 TATTATTA-TTATT-TTG
          1 TATTATTATTTATTGTTG

                                
       5309 TTATTATTATTTGATTGTTG
          1 -TATTATTATTT-ATTGTTG

                 *             
       5329 TATCTCTTATTTCATTGTT
          1 TAT-TATTATTT-ATTGTT

       5348 AATTTTGTTA


Statistics
Matches: 32,  Mismatches: 2, Indels: 5
        0.82            0.05        0.13

Matches are distributed among these distances:
  17    8  0.25
  18    2  0.06
  19    6  0.19
  20   16  0.50

ACGTcount: A:0.20, C:0.05, G:0.09, T:0.65


Consensus pattern (18 bp):   
TATTATTATTTATTGTTG
Done.