Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008467.1 Kokia drynarioides strain JFW-HI SEQ_123142, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 971

Length: 1619
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:805 original size:38 final size:38

Alignment explanation


    Indices: 763--842  Score: 99
    Period size: 37  Copynumber: 2.1  Consensus size: 38

        753 CAAGATTTCA

                            *   *                 
        763 CCCAAAAACCATCACCGCATGAATGTTTTCGAAATGCT
          1 CCCAAAAACCATCACCACATAAATGTTTTCGAAATGCT

                  *  **    *                      
        801 CCC-AAGACTGTCACTACATAAATGTTTTCGAAATGCT
          1 CCCAAAAACCATCACCACATAAATGTTTTCGAAATGCT

                 
        838 CCCAA
          1 CCCAA

        843 GACTATCGCT


Statistics
Matches: 35,  Mismatches: 6, Indels: 2
        0.81            0.14        0.05

Matches are distributed among these distances:
  37   31  0.89
  38    4  0.11

ACGTcount: A:0.34, C:0.29, G:0.12, T:0.25


Consensus pattern (38 bp):   
CCCAAAAACCATCACCACATAAATGTTTTCGAAATGCT

Found at i:858 original size:37 final size:37

Alignment explanation


    Indices: 773--858  Score: 127
    Period size: 37  Copynumber: 2.3  Consensus size: 37

        763 CCCAAAAACC

                 *    *                          
        773 ATCACCGCATGAATGTTTTCGAAATGCTCCCAAGACT
          1 ATCACTGCATAAATGTTTTCGAAATGCTCCCAAGACT

            *     *                              
        810 GTCACTACATAAATGTTTTCGAAATGCTCCCAAGACT
          1 ATCACTGCATAAATGTTTTCGAAATGCTCCCAAGACT

               *        
        847 ATCGCTGCATAA
          1 ATCACTGCATAA

        859 GTATTCTTCA


Statistics
Matches: 42,  Mismatches: 7, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  37   42  1.00

ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28


Consensus pattern (37 bp):   
ATCACTGCATAAATGTTTTCGAAATGCTCCCAAGACT
Done.