Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008468.1 Kokia drynarioides strain JFW-HI SEQ_123143, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3445
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.26


Found at i:474 original size:14 final size:14

Alignment explanation


    Indices: 450--498  Score: 62
    Period size: 14  Copynumber: 3.5  Consensus size: 14

        440 AACCTAAAAA

                          
        450 GTCAACGATCAACG
          1 GTCAACGATCAACG

                 **     * 
        464 GTCAATTATCAATG
          1 GTCAACGATCAACG

                         *
        478 GTCAACGATCAACA
          1 GTCAACGATCAACG

                   
        492 GTCAACG
          1 GTCAACG

        499 GTCAGGTTCG


Statistics
Matches: 28,  Mismatches: 7, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  14   28  1.00

ACGTcount: A:0.37, C:0.24, G:0.18, T:0.20


Consensus pattern (14 bp):   
GTCAACGATCAACG
Done.