Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008469.1 Kokia drynarioides strain JFW-HI SEQ_123144, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6134
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35


Found at i:879 original size:25 final size:25

Alignment explanation


    Indices: 851--947  Score: 122
    Period size: 25  Copynumber: 3.9  Consensus size: 25

        841 ATATCTTGTT

                    * *              
        851 TGGCTCATTATAGTGATATTCTATC
          1 TGGCTCATAAAAGTGATATTCTATC

                         *        *  
        876 TGGCTCATAAAAGCGATATTCTGTC
          1 TGGCTCATAAAAGTGATATTCTATC

              *   *   *    *         
        901 TGACTCGTAAGAGTGGTATTCTATC
          1 TGGCTCATAAAAGTGATATTCTATC

                                  
        926 TGGCTCATAAAAGTGATATTCT
          1 TGGCTCATAAAAGTGATATTCT

        948 GTTTGGGCTC


Statistics
Matches: 58,  Mismatches: 14, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  25   58  1.00

ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37


Consensus pattern (25 bp):   
TGGCTCATAAAAGTGATATTCTATC
Done.