genome.fa.s8474.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01008474.1 Kokia drynarioides strain JFW-HI SEQ_123149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  227884

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2334--2370	14	2.6	14	91	0	56	29	5	5	59	1.42
2467--2527	22	2.8	22	66	11	54	31	11	16	40	1.84
9940--9987	22	2.1	22	84	3	60	18	4	29	47	1.67
26759--26801	22	2.0	22	86	4	61	13	6	11	67	1.41
28642--28675	17	2.0	17	88	0	50	44	2	0	52	1.16
32772--32830	23	2.6	23	91	0	100	18	11	11	57	1.64
36749--36774	2	13.0	2	100	0	52	50	0	0	50	1.00
44463--44557	30	3.2	30	92	0	154	60	16	2	21	1.47
44582--44616	14	2.5	14	90	0	52	62	11	5	20	1.48
55085--55114	12	2.5	12	94	0	51	63	3	0	33	1.11
55355--55403	20	2.4	20	93	3	80	51	22	0	26	1.49
57049--57086	18	2.2	18	85	4	51	28	0	2	68	1.03
57624--57659	14	2.6	14	100	0	72	41	5	8	44	1.58
58206--58262	28	2.0	28	100	0	114	42	17	7	33	1.76
60188--60234	2	23.5	2	91	0	76	51	4	0	44	1.21
60530--60569	16	2.6	15	85	14	55	65	0	0	35	0.93
60994--61027	17	2.0	17	94	0	59	44	0	2	52	1.16
62036--62080	22	2.0	22	100	0	90	46	8	0	44	1.34
64111--64168	28	2.1	28	87	6	82	50	13	1	34	1.52
66908--66959	26	2.0	26	88	3	79	17	26	3	51	1.62
67043--67108	27	2.5	26	78	7	78	27	39	19	13	1.89
69503--69680	29	6.1	30	71	13	111	35	6	25	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69520--70049	59	9.1	59	77	10	380	38	3	25	33	1.73
69904--70125	57	3.9	57	79	7	227	39	2	22	36	1.66
69520--70050	28	18.2	27	68	17	169	38	3	25	33	1.73
69549--70130	29	19.9	28	68	15	238	38	3	24	33	1.72
71218--71243	3	8.7	3	100	0	52	30	0	0	69	0.89
71937--71978	17	2.5	17	92	0	66	47	4	0	47	1.23
72541--72574	16	2.1	16	94	0	59	55	11	2	29	1.50
73423--73485	31	2.0	31	84	0	81	57	3	1	38	1.24
78380--78418	20	1.9	21	89	5	62	28	2	7	61	1.37
78379--78424	21	2.2	21	81	14	60	28	2	6	63	1.31
78901--78939	16	2.4	17	91	4	62	58	7	0	33	1.26
89946--90012	35	1.9	35	87	6	100	55	8	8	26	1.61
90097--90268	59	2.9	59	83	0	200	26	16	9	47	1.77
90440--90605	90	1.8	90	81	2	208	45	15	17	21	1.85
91571--91617	22	2.1	22	88	0	67	55	10	12	21	1.67
94833--94895	29	2.1	30	83	13	78	49	11	6	33	1.64
97929--97971	21	2.0	21	86	8	61	60	2	30	6	1.35
98086--98132	16	2.8	16	83	6	58	8	27	8	55	1.59
103495--103611	30	4.0	30	75	17	111	50	5	13	29	1.65
103495--103611	31	4.0	30	76	17	120	50	5	13	29	1.65
103525--103609	27	3.0	27	73	21	93	49	7	12	30	1.68
103495--103609	57	2.0	57	93	0	194	50	6	13	30	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104295--104333	19	2.1	19	95	0	69	41	10	20	28	1.85
105550--105932	176	2.2	175	83	6	497	27	17	19	35	1.94
106642--106810	84	2.0	84	97	0	320	30	10	17	41	1.83
109598--109645	24	2.0	24	95	0	87	10	16	10	62	1.53
110291--110341	15	3.5	15	78	5	68	49	17	1	31	1.58
112814--112895	42	2.0	42	85	4	114	50	17	13	19	1.78
114211--114275	20	3.0	20	78	10	58	66	20	4	9	1.38
114231--114282	23	2.2	24	82	3	70	67	17	5	9	1.38
114267--114306	21	1.9	21	84	0	53	75	15	0	10	1.05
114211--114343	56	2.4	56	80	8	148	69	17	4	8	1.30
114281--114351	24	3.0	23	81	6	81	73	18	4	4	1.16
114225--114351	12	11.1	12	71	9	68	70	18	4	6	1.27
117449--117480	2	16.0	2	100	0	64	50	0	50	0	1.00
144753--144990	123	1.9	123	87	1	352	31	5	23	39	1.78
144763--145041	123	2.3	123	82	5	330	31	6	22	39	1.79
145727--145777	17	3.0	17	77	8	50	29	7	15	47	1.74
146593--146637	24	1.9	23	90	4	72	31	4	13	51	1.61
152409--152482	25	2.9	25	75	2	85	45	0	9	44	1.36
159896--160038	72	2.0	72	98	0	277	30	16	16	37	1.90
166224--166248	2	12.5	2	100	0	50	52	0	0	48	1.00
169500--169614	56	2.1	56	96	0	212	40	9	13	37	1.77
174080--174113	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174325--174522	99	2.0	98	97	1	369	43	11	7	37	1.69
182171--182244	37	2.0	37	82	12	91	50	2	0	47	1.15
184734--184774	21	2.0	21	85	9	57	36	0	2	60	1.10
185295--185355	31	2.0	31	83	0	77	32	9	16	40	1.81
190762--190791	2	15.0	2	100	0	60	50	0	0	50	1.00
197239--197306	32	2.1	32	94	0	118	23	0	16	60	1.36
202774--202956	84	2.1	84	83	5	231	45	18	6	29	1.73
203519--203546	2	14.0	2	100	0	56	50	50	0	0	1.00
204641--204685	18	2.5	18	100	0	90	20	24	13	42	1.87
206221--206262	21	2.0	22	85	4	59	19	4	2	73	1.12
207688--207723	17	2.1	18	89	5	56	30	16	5	47	1.70
208786--208844	22	2.6	23	86	5	75	30	0	59	10	1.30
218677--218702	6	4.3	6	100	0	52	30	15	34	19	1.93

Tables:   1

The End!