Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008478.1 Kokia drynarioides strain JFW-HI SEQ_123153, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4614
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35


Found at i:4119 original size:16 final size:16

Alignment explanation


    Indices: 4098--4128  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       4088 AAATTGGTTG

                    *       
       4098 ATTTTTAGTTTAATTA
          1 ATTTTTAGATTAATTA

                           
       4114 ATTTTTAGATTAATT
          1 ATTTTTAGATTAATT

       4129 TGATTAATTG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.32, C:0.00, G:0.06, T:0.61


Consensus pattern (16 bp):   
ATTTTTAGATTAATTA
Done.