Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008479.1 Kokia drynarioides strain JFW-HI SEQ_123154, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:3896 original size:25 final size:25

Alignment explanation


    Indices: 3862--3915  Score: 99
    Period size: 25  Copynumber: 2.2  Consensus size: 25

       3852 TTTCTTATGG

                                     
       3862 ATGATGAACTATTAATAATATTTGA
          1 ATGATGAACTATTAATAATATTTGA

                          *          
       3887 ATGATGAACTATTATTAATATTTGA
          1 ATGATGAACTATTAATAATATTTGA

                
       3912 ATGA
          1 ATGA

       3916 ATACGAGAGT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  25   28  1.00

ACGTcount: A:0.43, C:0.04, G:0.13, T:0.41


Consensus pattern (25 bp):   
ATGATGAACTATTAATAATATTTGA

Found at i:4407 original size:22 final size:23

Alignment explanation


    Indices: 4363--4408  Score: 67
    Period size: 22  Copynumber: 2.0  Consensus size: 23

       4353 ACAACAATTT

                *          *       
       4363 AATTTACTTTTAATTGCATTGAC
          1 AATTAACTTTTAATTACATTGAC

                                   
       4386 AATTAACTTTT-ATTACATTGAC
          1 AATTAACTTTTAATTACATTGAC

             
       4408 A
          1 A

       4409 GTTTTGACTA


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  22   11  0.52
  23   10  0.48

ACGTcount: A:0.35, C:0.13, G:0.07, T:0.46


Consensus pattern (23 bp):   
AATTAACTTTTAATTACATTGAC
Done.